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jalview.git
2019-06-05
tva
JAL-3285 add unmerged features to AlignViewport
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2019-06-05
tva
JAL-3285 add unmerged features into AlignmentViewport
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2019-06-05
tva
JAL-3285 add methods and small changes to StockholmFile...
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2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
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2019-06-04
Ben Soares
JAL-3287 correct local file URI for appbase and getdown...
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2019-06-04
Ben Soares
JAL-3287 adjustment to HelpLinksChecker
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2019-06-04
Ben Soares
JAL-3287 adjustment to HelpLinksChecker to run in Windo...
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2019-05-31
Ben Soares
JAL-3247 Adjusted Uninstall Old Jalview.app to just...
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2019-05-29
gmungoc
JAL-2738 error logging if no ##reference found
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2019-05-29
gmungoc
JAL-2738 accept .csi, default to GRCh37:homo_sapiens...
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2019-05-28
Ben Soares
JAL-3277 Fixed getdown splashscreen. For unknown reason...
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2019-05-28
Ben Soares
JAL-1988 Some TEST code accidentally left in now remove...
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2019-05-28
Jalview Development...
JAL-3247 sign the AppleScript uninstaller
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2019-05-28
Ben Soares
JAL-3141 deleted TODO comment in Messages_es
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2019-05-28
Ben Soares
Merge branch 'develop' into task/JAL-3141_JAL-3247_merge
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2019-05-27
Ben Soares
JAL-3141 Added HashMap types for Java 1.8 compatibility
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2019-05-27
Ben Soares
Merge branch 'task/JAL-3141_Customise_checkbox' into...
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2019-05-27
Ben Soares
JAL-3141 Object array cast missing
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2019-05-27
Ben Soares
Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
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2019-05-27
Ben Soares
Merge branch 'develop' into task/JAL-3247_JAL-3246_JAL...
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2019-05-27
Ben Soares
JAL-3247 Added AppleScript based App to run old Jalview...
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2019-05-27
Ben Soares
JAL-3141 Generified the JvUtils.buildComboWithTooltips...
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2019-05-27
gmungoc
JAL-3141 test file in test folder not examples
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2019-05-25
Ben Soares
JAL-3141 One more error log fix
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2019-05-25
Ben Soares
JAL-3141 Added tooltips on Schemes dropdown and Customi...
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2019-05-24
Ben Soares
JAL-3141 Fixes recommended from gmc's test
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2019-05-24
gmungoc
JAL-1988 Spanish typo corrección
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2019-05-24
Ben Soares
JAL-3141 Fixed vertical size of the example filenames...
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2019-05-24
Ben Soares
JAL-3141 Fixed tests
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2019-05-24
Ben Soares
JAL-3141 Reworked a lot of BackupFiles to allow the...
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2019-05-22
Ben Soares
Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
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2019-05-22
gmungoc
JAL-3111 help file spelling correction
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2019-05-21
Ben Soares
JAL-3247 Launcher start improvements. RPM and DEB no...
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2019-05-21
gmungoc
JAL-3273 small correction to expected result calculation
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2019-05-20
Ben Soares
Merge branch 'task/JAL-3254_improved_max_memory_stack_s...
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2019-05-20
Ben Soares
JAL-3247 Unix shell installer and tar archive corrected...
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2019-05-20
Ben Soares
JAL-3254 Improved memory setting (allows mem for OS...
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2019-05-13
Jim Procter
Merge branch 'task/JAL-3247_Install4j_improvements...
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2019-05-13
Ben Soares
Merge branch 'task/JAL-3236_install4j_linux_unix_userla...
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2019-05-13
Ben Soares
JAL-3247 nogradle option on this mac build/install...
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2019-05-13
Ben Soares
JAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...
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2019-05-10
Jim Procter
Merge branch 'task/JAL-3246_local_getdown_files' into...
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2019-05-10
Ben Soares
JAL-3246 JAL-3247 Reworked JVL files as getdown.txt...
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2019-05-10
Jim Procter
Merge branch 'task/JAL-3236_install4j_linux_unix_userla...
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2019-05-09
Ben Soares
JAL-3236 Added unixInstaller to install4jMediaTypes...
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2019-05-09
Jim Procter
Merge branch 'task/JAL-3246_local_getdown_files' into...
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2019-05-09
Ben Soares
JAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...
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2019-05-09
Ben Soares
JAL-3247 JAL-3254 Fixed file association launch behavio...
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2019-05-08
Ben Soares
JAL-3246 add -Pgetdown_local=true to use local files
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 changing default location of jalview...
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 Getdown now opening any files thrown...
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 Automatically creating correct file...
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2019-05-08
Ben Soares
JAL-3247 JAL-3254 Automatically creating correct file...
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2019-05-08
Ben Soares
JAL-3247 Script to produce auto file association files...
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2019-05-08
Ben Soares
JAL-3247 Note in launcher.log when using a JVL file
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2019-05-07
Ben Soares
JAL-3247 Changed JVL file to be a props file, with...
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2019-05-07
Ben Soares
JAL-3247 Script to automatically install Jalview from...
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2019-05-07
Ben Soares
JAL-3247 Auto generated file associations from jalview...
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2019-05-06
Ben Soares
JAL-3247 Allowing 'file' protocol URL with empty domain...
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2019-05-06
Ben Soares
JAL-3247 Code changes to getdown. Double click open...
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2019-05-06
Ben Soares
JAL-3247 improvements
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2019-05-06
Ben Soares
JAL-3247 Some getdown image file changes/tidying
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2019-05-06
gmungoc
JAL-3240 known issue for release notes
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2019-05-06
gmungoc
JAL-3239 release note
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2019-05-06
gmungoc
JAL-3244 release note
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2019-05-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3239monosp...
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2019-05-06
gmungoc
JAL-3244 delete obsolete method
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2019-05-03
Ben Soares
JAL-3247 First attempt at getdown code to add macOS...
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2019-05-03
Ben Soares
JAL-3247 Part way towards adding double-click opening...
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2019-05-02
Ben Soares
JAL-3247 Improved file associations on macOS and Windows
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2019-05-02
gmungoc
JAL-3239 draw EPS or SVG one character at a time (even...
bug/JAL-3239monospacedEps
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2019-05-02
gmungoc
Merge branch 'bug/JAL-3244jmolWindows' into develop
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2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
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2019-05-02
Ben Soares
adding another getdown file (produced during a getdown...
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2019-05-02
Ben Soares
JAL-3247 jvp jvl File associations, JRE variablised...
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2019-05-01
Ben Soares
Fixed -Djvl=true in install4j JVM invocation
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2019-05-01
Ben Soares
Extra JVL file association in the installer. Shadowed...
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2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
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2019-05-01
Ben Soares
Merge branch 'task/JAL-3243_PDB_free_text_error' into...
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2019-04-30
Ben Soares
JAL-3243 Replaced javax.ws jar compatible with jersey...
task/JAL-3243_PDB_free_text_error
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2019-04-30
Ben Soares
JAL-3196 Correcting the source for getdown (already...
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2019-04-30
gmungoc
JAL-3241 simplified enum constructors for classloadabil...
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2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
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2019-04-29
gmungoc
JAL-3003 help page mention EPS doesn't support transparency
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2019-04-26
Jim Procter
JAL-3236 see also previous commit - tweak the install4j...
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2019-04-26
Ben Soares
Added a unixInstaller and unixArchive media-type to...
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2019-04-26
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
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2019-04-26
Ben Soares
Removing old commented out 'org.gradle.java.home='...
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2019-04-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2019-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2019-04-26
gmungoc
JAL-2743 class Javadoc
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2019-04-26
gmungoc
JAL-2738 JAL-2743 properties to map VCF header to speci...
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2019-04-26
Ben Soares
Also removing eclipse .project and .settings from the...
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2019-04-26
Ben Soares
Removing .classpath from this branch
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2019-04-26
Jim Procter
JAL-3150 examples/exampleFile.jvp for updated manual...
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2019-04-26
Ben Soares
JAL-3233 Added isAMac check for -Xdock:icon addition...
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2019-04-26
gmungoc
JAL-3010 borderless 'x' for "delete this filter condition"
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2019-04-26
gmungoc
JAL-2808 better tooltip 'delete this condition'
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2019-04-25
Jalview Build Box
JAL-3234 tidy up stdout on build
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2019-04-25
Jalview Build Box
JAL-3234 allow gradle builds to run without having...
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