jalview.git
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-07-18 jproctercomment
2008-07-18 jprocterannotation file format updated to take idColour and...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-07-18 jprocterUser defined colourschemes are automatically generated...
2008-07-18 jprocterprevent exception when no default timeout is specified
2008-07-11 jprocterensure annotationElements in non-graphical annotation...
2008-06-30 jprocterjavadoc and constraint to ensure annotation labels...
2008-06-30 jprocterjava 1.1 compatibility
2008-06-30 jproctertiming of 'on load' output before any gui thread operations
2008-06-30 jproctersafer retrieval of groovy scripts from URLs
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio...
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded...
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar...
2008-05-26 jprocterUniprot is not actually a multi-acc capable source...
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property...
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are...
2008-05-12 jprocterfixed Jalview project archive bug where alignment view...
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised...
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc...
2008-04-29 jproctercomments and version wget ping timeout fix for when...
2008-04-29 jprocteradded SeqSearch service interface. Documented and refac...
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the...
2008-04-25 jprocterpotential fix for hang on opening of application window...
2008-04-22 jproctertypo on Jalview help url
2008-04-21 jprocterdocumented and refactored to facilitate headless featur...
2008-04-21 jprocteradded centre column labels menu entry to format menu
2008-04-21 jprocteradded centre annotation labels menu entry (and commente...
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added...
2008-04-21 jproctercastor debug option cleared
2008-04-17 jprocterbugfix for refactoring (webservice windows wouldn't...
2008-04-17 jprocterjavadoc and refactor of setWebService method to allow...
2008-04-17 jproctertodo for refactoring webservice GUI creation mechanism
2008-04-17 jprocterjavadoc for webservice client tutorial
2008-04-17 jproctertodos
2008-04-17 jprocterjavadoc and quiet flag
2008-04-11 jprocterfix JPred thread so job aborts if submission fails.
2008-04-10 jprocterquick fix for conservation calculation when residue...
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2008-03-08 jprocterfirst hack to get true DNA and Sequence highlighting...
2008-03-08 jproctercorrection to Jnet service documentation
2008-02-24 jproctersequenceId is a string, not an integer - allows generat...
2008-02-24 jproctersequenceId is a string, not an integer - allows generat...
2008-02-22 jproctersequenceId is a string, not an integer - allows generat...
2008-02-22 jproctervalid format for writing test
2008-02-22 jprocterprobably unnecessary optimisation (SequenceGroup.addSeq...
2008-02-22 jprocterOn 'save' menu entry check to see if fileformat is...
2008-02-22 jprocterCDS segment index
2008-02-22 jprocterpossible fix for stockhom ss-annotation re-creation...
2008-02-22 jprocterindex number for contiguous part of mapped sequence...
2008-02-22 jprocterjavadoc
2008-02-22 jproctertypo for AXISLOGLEVEL constant
2008-02-22 jprocterexplicit quote of chaincode in errror message
2008-01-29 jprocterminor change to output of main method for testing file IO
2008-01-29 jproctergroovy from stdin
2008-01-29 jproctermemory usage information and flag to indicate if warnin...
2008-01-29 jprocteradd methods to read from current position of existing...
2008-01-29 jprocterensure mark is set before identification is started.
2008-01-29 jprocterFileParse object can be re-used to read different files...
2008-01-29 jprocterflag to indicate if errors are raised as warning dialog...
2008-01-29 jprocterexplicitly allow access to showMemoryUsage flag in...
2008-01-29 jprocterjavadoc
2008-01-29 jproctergroovy scripts can be read from stdin
2008-01-29 jprocterreinstated proper case insensitive searching for both...
2008-01-22 jproctertimings and memory usage for reading in a file
2008-01-22 jproctermore efficient parsing of large files, do not create...
2008-01-22 jprocterensured that seqeunce feature shift takes into account...
2008-01-22 jprocternew method to get map of sequence positions correspondi...
2008-01-21 jprocterfix regex for annotation subtype to use non-whitespace...
2008-01-21 jprocterjavadoc and main method for testing file input routines
2008-01-21 jprocterjavadoc
2008-01-15 jprocterdraft of 2.4 features in feature list
2008-01-11 jprocteradded groovy documentation to contents
2008-01-11 jprocterjalview memory monitor instructions added
2008-01-11 jprocterdesktop tools menu updated
2008-01-11 jproctergroovy and das fetching stuff in command line argument...
2008-01-11 jprocterdocumentation for groovy console and basic groovy...
2008-01-11 jprocteradded groovy argument for launching a groovy script...
2008-01-11 jproctermemory monitor, garbage collection and changed menu...
2007-12-21 jprocteruniprotxml format comment (ebi changed service parameter)
2007-12-21 jproctersource directory tree documentation
2007-12-21 jprocterautomatic dbref fetching and sequence validation for...
2007-12-21 jprocterfurther bugfix and annotation transfer for dna/protein...
2007-12-21 jprocterjavadoc and bugfix
2007-12-21 jproctersequence db fetcher and db reference validation/annotat...
2007-12-21 jproctersequence db fetcher metadata for multiple sequence...
2007-12-21 jproctertemporary bugfix ?
2007-12-21 jprocterbugfix
2007-12-21 jprocterequivalence for transferring/updating references
2007-12-21 jprocterbugfixes
2007-12-18 jprocterincorrect colour-by-sequence when gaps are present...
2007-12-13 jprocterjava 1.1 compatibility (again)
2007-12-13 jprocterjava 1.1 compatibility (again)
2007-11-30 jprocternull pointer bugfix
2007-11-30 jprocterbugfixed MapList (must be propagated to vamsas version...
2007-11-30 jprocterjavadoc and transferAnnotation method
2007-11-30 jproctercase insensitive matching of database ids
2007-11-30 jproctercase invariant matching of seqeunce feature to sequence...
2007-11-28 jprocterbugfix
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