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jalview.git
2018-05-01
Jim Procter
JAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...
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2018-05-01
Jim Procter
JAL-2906 reformat release notes
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2018-05-01
Jim Procter
JAL-2906 typo
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2018-05-01
Jim Procter
JAL-2944 revised docs and structure chooser screen...
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2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
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2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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2018-04-30
Jim Procter
JAL-2906 release 2.10.4 on 1st May 2018
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2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
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2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-24
gmungoc
JAL-2939 exit calc thread if no HMM in alignment
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2018-04-24
gmungoc
JAL-591 use constant for Preferences key
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2018-04-24
gmungoc
JAL-2616 unused field removed
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2018-04-24
gmungoc
JAL-2956 unit test
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2018-04-23
gmungoc
JAL-2956 save/restore HMMER profile to/from Jalview...
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2018-04-23
gmungoc
JAL-2954 more efficient SearchResults.markColumns
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2018-04-23
gmungoc
JAL-2952 set negative TempFactor values as AlignmentAnn...
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2018-04-23
gmungoc
JAL-2957 don't validate input on arrow keys
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2018-04-23
gmungoc
JAL-591 ensure slider hidden if text input field only
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2018-04-20
gmungoc
JAL-591 slider scale factor now derived from min-max...
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2018-04-20
gmungoc
JAL-591 tidy and comment code
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2018-04-20
gmungoc
JAL-2629 tweaks to text
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2018-04-20
gmungoc
JAL-591 OptionBox FlowLayout, tweaks to wrapping of...
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2018-04-19
gmungoc
JAL-591 utility method renamed and slightly generalised
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2018-04-18
gmungoc
Merge branch 'develop' into features/mchmmer
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2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18
gmungoc
JAL-2593 render 'duplicate' features if transparency...
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2018-04-18
gmungoc
JAL-2629 corrected cutoff parameter passing to hmmsearch
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2018-04-17
gmungoc
Merge branch 'features/mchmmer' of https://source.jalvi...
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2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
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2018-04-17
Mungo Carstairs
JAL-2937 working Cygwin bash execution of hmmbuild...
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2018-04-16
gmungoc
JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
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2018-04-16
gmungoc
JAL-2937 use preferences for presets, simplify some...
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2018-04-13
gmungoc
Merge branch 'features/JAL-2944_openStructuresInSelecte...
features/JAL-2944_openStructuresInSelectedView
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2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
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2018-04-12
gmungoc
JAL-1847 minor post-review updates
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2018-04-12
gmungoc
JAL-2944 tidies for review comments
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2018-04-11
Jim Procter
JAL-2946 catch unexpected SIFTS mapping exceptions...
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2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
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2018-04-09
Mungo Carstairs
JAL-2629 more error checking
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2018-04-09
Mungo Carstairs
JAL-2937 extract reusable utility method
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2018-04-09
Mungo Carstairs
JAL-2069 typo
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2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
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2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
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2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
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2018-04-06
Jim Procter
failing test for JAL-2223
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2018-04-05
Jim Procter
JAL-2945 resolve model as PDB file. Need to verify...
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2018-04-05
Jim Procter
JAL-2945 failing test for structure mapping
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2018-04-05
Jim Procter
JAL-2945 formatting
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2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
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2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
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2018-04-05
Jim Procter
JAL-2944 combo box to pick which viewer to load structu...
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2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
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2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
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2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
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2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
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2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
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2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
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2018-03-30
gmungoc
JAL-2599 MapList from HMM nodes to consensus dataset...
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2018-03-30
gmungoc
JAL-2629 tidy code, factory methods for param sets
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2018-03-30
gmungoc
JAL-2629 use correct gap character, revised deletion...
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2018-03-30
gmungoc
JAL-2629 Javadoc updates
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2018-03-30
gmungoc
JAL-2629 combine with/without defaults in one method...
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2018-03-30
gmungoc
JAL-2939 field/method naming more consistent
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2018-03-30
gmungoc
JAL-2629 ensure hmm consensus sequence set on alignment...
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2018-03-30
gmungoc
JAL-2941 'map hmm to RF' removed pending clarifications
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2018-03-30
gmungoc
small tidy
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2018-03-30
gmungoc
JAL-2938 revisions to implementation details
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2018-03-30
gmungoc
JAL-2939 remove commented out code
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2018-03-30
gmungoc
JAL-2599 move utility method to MappingUtils
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2018-03-30
gmungoc
JAL-2939 simplified way of getting hmm consensus residue
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2018-03-30
gmungoc
JAL-2629 add title to output alignment window
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2018-03-30
gmungoc
JAL-2629 select HMM selects sequence under cursor
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2018-03-30
gmungoc
JAL-2599 corrected test file name in unit test
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2018-03-29
gmungoc
JAL-2907 test method renamed to match method name change
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2018-03-29
gmungoc
JAL-2907 bug fix redone on HMMER branch
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2018-03-28
gmungoc
JAL-1265 output all dbrefs in Stockholm (+tests) (...
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2018-03-26
gmungoc
JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
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2018-03-26
gmungoc
JAL-2939 unused action handler methods removed
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2018-03-26
gmungoc
JAL-2939 no need to recalc HMM annotation for show...
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2018-03-26
gmungoc
JAL-2939 always store Information profile
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2018-03-23
gmungoc
JAL-2629 pad gaps when exporting alignment as 'database...
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2018-03-23
gmungoc
JAL-2937 unused field removed
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2018-03-23
gmungoc
JAL-2938 update colour schemes enum for class name...
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2018-03-23
gmungoc
JAL-2938 extracted base class for Hmmer colour schems
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2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21
Jim Procter
JAL-2754 reinstate PA import from bad conflict merge
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2018-03-21
Jim Procter
JAL-2754 remove duplicate classpath entry again
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2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 don’t use deprecated api for getting font...
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2018-03-21
Jim Procter
JAL-2754 fix eclipse compilation error about referencin...
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2018-03-21
gmungoc
JAL-2929 use configure Overview gap colour instead...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 dont put '<>' in <echo> text!
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2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
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2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 clean up proguard path spec and config variables
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2018-03-21
gmungoc
JAL-2754 renamed proguard.jar to include version number
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