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jalview.git
2017-10-23 Jim ProcterJAL-2768 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2739 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2682 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-2776 repaint everything on toggle group colour bug/JAL-2776toggleGroupColour commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2253 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-2737 JAL-1854 corrected package suppressions, updat... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not neede... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 PID script in release notes commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score... commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2609 adjustments for test findings commit | commitdiff | tree | snapshot
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignmen... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 remove dead code commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2777 JAL-2773 release notes commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 release notes commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterMerge branch 'features/JAL-2773_dontalwaysrecolourstruc... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of... commit | commitdiff | tree | snapshot
2017-10-13 kjvdheidebasic tests for Aptx commit | commitdiff | tree | snapshot
2017-10-13 kjvdheideArchaeopteryxInit is now static commit | commitdiff | tree | snapshot
2017-10-13 kjvdheidesimplified aptx frame creation code commit | commitdiff | tree | snapshot
2017-10-13 kjvdheideforester added as submodule commit | commitdiff | tree | snapshot
2017-10-13 kjvdheideSlight Aptx colour change commit | commitdiff | tree | snapshot
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff | tree | snapshot
2017-10-12 kjvdheideCustom aptx configuration added commit | commitdiff | tree | snapshot
2017-10-12 kjvdheidemoved Aptx creation from CalculationChooser to separate... commit | commitdiff | tree | snapshot
2017-10-12 kjvdheideCreated test class for Archaeopteryx tree viewing commit | commitdiff | tree | snapshot
2017-10-11 kjvdheideforester as submodule with InternalFrame + start of... commit | commitdiff | tree | snapshot
2017-10-11 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tests updated for revised label width commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds commit | commitdiff | tree | snapshot
2017-10-11 kjvdheidejust a comment commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns... commit | commitdiff | tree | snapshot
2017-10-11 Jim ProcterJAL-2757 release notes commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 minor test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kjvdheideAdded tree building (without distances yet) commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2609attemptedmerge tidy commit | commitdiff | tree | snapshot
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2690attemptedmerge seems to work commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLate... commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2392 formatting commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff | tree | snapshot
2017-10-10 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-10 kjvdheideStart of programmatically creating Aptx trees commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2523 release notes commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2690attemptedmerge partial merge commit | commitdiff | tree | snapshot
2017-10-09 kjvdheidefixed incorrect panel title commit | commitdiff | tree | snapshot
2017-10-09 kjvdheideStart of creating tree nodes for Aptx commit | commitdiff | tree | snapshot
2017-10-09 kjvdheideFully separated tree GUI from calculation commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 convenience method to get model organisms commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterMerge branch 'patch/JAL-2446_mergeconflictmissed' into... commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. commit | commitdiff | tree | snapshot
2017-10-07 kjvdheideRenaming commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterMerge branch 'patch/JAL-2116_java9_antjnlpfix' into... commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterJAL-2116 fix jnlp file post-processing so java 9 module... commit | commitdiff | tree | snapshot
2017-10-06 kjvdheideStart of creating the objects Archaeopteryx needs commit | commitdiff | tree | snapshot
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response commit | commitdiff | tree | snapshot
2017-10-05 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-05 kjvdheideBlank interfaces added commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2523 start of refactoring... commit | commitdiff | tree | snapshot
2017-10-03 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' into... commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideProper copyright dating added commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideKept copyright test to just the new classes commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideCopyright test commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterMerge branch 'documentation/JAL-2751patch2102b2' into... commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterJAL-2751 what's new for 2.10.2b2 patch commit | commitdiff | tree | snapshot
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