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jalview.git
2020-12-02 gmungocJAL-3761 helper method reinstated to avoid code duplication commit | commitdiff | tree | snapshot
2020-11-26 gmungocJAL-3761 locateInFrom/To revised with tests; unused... commit | commitdiff | tree | snapshot
2020-11-20 gmungocJAL-3761 extra check that VCF feature is fully mappable... commit | commitdiff | tree | snapshot
2020-11-20 gmungocJAL-3761 debugged and working (but not tidied) locateIn... commit | commitdiff | tree | snapshot
2020-11-12 gmungocJAL-3761 locateInFrom2 work in progress commit commit | commitdiff | tree | snapshot
2020-10-29 gmungocJAL-3761 unit test for MapList.countPos() commit | commitdiff | tree | snapshot
2020-10-08 gmungocJAL-3761 failing test, formatting, method renamed commit | commitdiff | tree | snapshot
2020-10-01 gmungocJAL-3761 failing tests for locateInFrom/To with overlap... commit | commitdiff | tree | snapshot
2020-09-24 gmungocJAL-3751 only merge strictly contiguous ranges of mappings bug/JAL-3751overlappingCDS commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when... commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when... commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... commit | commitdiff | tree | snapshot
2020-09-11 Ben SoaresJAL-3679 Added externally specified plugins dir to... commit | commitdiff | tree | snapshot
2020-09-10 Jim ProcterJAL-3746 bump release version for 2.11.2 series (curren... commit | commitdiff | tree | snapshot
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands commit | commitdiff | tree | snapshot
2020-09-04 Ben SoaresJAL-3679 Added externally specified plugins dir to... feature/JAL-3615gzipXfam commit | commitdiff | tree | snapshot
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... commit | commitdiff | tree | snapshot
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key... commit | commitdiff | tree | snapshot
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... commit | commitdiff | tree | snapshot
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0 commit | commitdiff | tree | snapshot
2020-08-31 gmungocJAL-1191 use Cache.log for logging commit | commitdiff | tree | snapshot
2020-08-31 gmungocJAL-1191 reduce logging level for warnings commit | commitdiff | tree | snapshot
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0 commit | commitdiff | tree | snapshot
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test commit | commitdiff | tree | snapshot
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes commit | commitdiff | tree | snapshot
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop commit | commitdiff | tree | snapshot
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report... commit | commitdiff | tree | snapshot
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... commit | commitdiff | tree | snapshot
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... commit | commitdiff | tree | snapshot
2020-08-03 Ben SoaresJAL-3477 added help documentation for executable jar... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,... commit | commitdiff | tree | snapshot
2020-07-20 gmungocJAL-3597 slight tidying of code and Javadoc, passmark... commit | commitdiff | tree | snapshot
2020-07-14 gmungocJAL-1421 last change tidied up properly commit | commitdiff | tree | snapshot
2020-07-14 gmungocJAL-1421 types added to nameHash and nodeHash maps commit | commitdiff | tree | snapshot
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 commit | commitdiff | tree | snapshot
2020-07-07 gmungocJAL-1424 streamlined message checker, corrected applet... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-1424 slight tidying of reporting commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3518 Spanish text for 'write features' commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 updated external help links commit | commitdiff | tree | snapshot
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff | tree | snapshot
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column... commit | commitdiff | tree | snapshot
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands commit | commitdiff | tree | snapshot
2020-06-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command commit | commitdiff | tree | snapshot
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer() commit | commitdiff | tree | snapshot
2020-06-28 gmungocJAL-3551 PyMOL command constants tidied commit | commitdiff | tree | snapshot
2020-06-28 gmungocJAL-3551 fit to window (zoom) command for PyMOL commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections... commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... commit | commitdiff | tree | snapshot
2020-06-26 gmungocJAL-3518 tidy up asynchronous structure command execution commit | commitdiff | tree | snapshot
2020-06-25 gmungocJAL-2010 unused prototype method removed commit | commitdiff | tree | snapshot
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... commit | commitdiff | tree | snapshot
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... commit | commitdiff | tree | snapshot
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... commit | commitdiff | tree | snapshot
2020-06-08 soaresJAL-3446 new Jmol 15.1.3 jar added to j11lib, old j11li... commit | commitdiff | tree | snapshot
2020-06-04 Ben SoaresJAL-3225 Minor change to building.md for flexmark,... commit | commitdiff | tree | snapshot
2020-06-04 Ben SoaresJAL-3225 Removed dependency on command line pandoc... commit | commitdiff | tree | snapshot
2020-06-02 Ben SoaresJAL-3225 Using Gradle Git-Version plugin to set gitHash... commit | commitdiff | tree | snapshot
2020-06-02 soaresJAL-3225 small fixes for building within Eclipse commit | commitdiff | tree | snapshot
2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in... commit | commitdiff | tree | snapshot
2020-06-01 gmungocJAL-3518 test result corrected commit | commitdiff | tree | snapshot
2020-06-01 gmungocJAL-3518 add alwaysRun = true [sigh] commit | commitdiff | tree | snapshot
2020-06-01 gmungocJAL-3518 more test coverage for structure commands commit | commitdiff | tree | snapshot
2020-05-29 gmungocJAL-2422 test updated commit | commitdiff | tree | snapshot
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop commit | commitdiff | tree | snapshot
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-3551 corrected Pymol open session command commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands... commit | commitdiff | tree | snapshot
2020-05-27 Ben SoaresJAL-3541 ensure deletion of cloverReportDir commit | commitdiff | tree | snapshot
2020-05-27 Ben SoaresJAL-3541 small fix for clover.xml location expected... commit | commitdiff | tree | snapshot
2020-05-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-05-26 gmungocJAL-1889 disable test failing on build server commit | commitdiff | tree | snapshot
2020-05-26 soaresMerge branch 'bug/JAL-3541_cloverReport_gradle_task_fai... commit | commitdiff | tree | snapshot
2020-05-26 soaresJAL-3541 added a property/variable style comment to... bug/JAL-3541_cloverReport_gradle_task_fails commit | commitdiff | tree | snapshot
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