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jalview.git
2018-01-29 kiramtJAL-2759 numColumns reset commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear() commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Tidy commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Fix unintended type change commit | commitdiff | tree | snapshot
2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressio... commit | commitdiff | tree | snapshot
2018-01-26 Jim ProcterMerge branch 'releases/Release_2_10_3_Branch' into... commit | commitdiff | tree | snapshot
2018-01-26 kiramtJAL-2778 try another way to draw sequences with reduced... commit | commitdiff | tree | snapshot
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims commit | commitdiff | tree | snapshot
2018-01-25 kiramtJAL-2778 Tidy commit | commitdiff | tree | snapshot
2018-01-25 kiramtJAL-2778 added JAL-2851 fix to avoid confusion commit | commitdiff | tree | snapshot
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch releases/Release_2_10_3_Branch Release_2_10_3b1 commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterJAL-2858 update release date and rejig what's new message commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 fix what's new commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update latest release notes link in TOC commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2859 release notes commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update release notes commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 release notes for 2.10.3b1 (including revision... commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 bump version number for 2.10.3b1 commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 Updated test commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 unit tests (incomplete) commit | commitdiff | tree | snapshot
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Minor doc and naming changes commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updates following review commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2018-01-11 kiramtJAL-2662 Updated README task/JAL-2662 commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-2865 unhelpful System.gc() calls removed bug/JAL-2865removeGC commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor() commit | commitdiff | tree | snapshot
2018-01-10 kiramtJAL-797: Added keybindings so that ctrl- or cmd-W close... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc commit | commitdiff | tree | snapshot
2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold commit | commitdiff | tree | snapshot
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 missed Castor class commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 missed Castor class commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 and Castor metadata file for latest changes commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 schema and code changes to save colour by... commit | commitdiff | tree | snapshot
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience commit | commitdiff | tree | snapshot
2017-12-11 gmungocJAL-2843 add colour by attribute, and no value colour... commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 example filters added commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 refactor / tidy for feature filter input/output commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 methods relocated commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature... commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns... commit | commitdiff | tree | snapshot
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest commit | commitdiff | tree | snapshot
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 refactored to extract specific consequence... commit | commitdiff | tree | snapshot
2017-12-01 Jim ProcterMerge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2858 tweak OSX specific jar resources in JNLP commit | commitdiff | tree | snapshot
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig... commit | commitdiff | tree | snapshot
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
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