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jalview.git
2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-05
gmungoc
Merge branch 'spikes/mungo' into trialMerge
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2018-02-05
kiramt
JAL-2778 Sequence width benchmark
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-02
gmungoc
JAL-984 merged to spikes-mungo
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2018-02-02
gmungoc
Merge branch 'feature/JAL-984splitAdjuster' into featur...
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2018-02-02
gmungoc
JAL-2899 asynchronous Jmol colour updates
bug/JAL-2899
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2018-02-02
gmungoc
JAL-984 use cursor for drag regions to adjust annotatio...
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2018-02-02
gmungoc
JAL-984 better behaved panel height adjuster
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2018-02-01
gmungoc
JAL-2899 update structure and overview on slider drag...
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2018-02-01
kiramt
JAL-2759 Added in JAL-2851 fix
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2018-02-01
kiramt
JAL-2759 use right iterator for getVisibleColsIterator
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2018-01-31
kiramt
JAL-2759 Rationalise VisibleColsIterator and HiddenCols...
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2018-01-31
kiramt
JAL-2759 Generalised HiddenColsIterator naming
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2018-01-31
gmungoc
JAL-2792 added tooltip to menu items in case of truncation
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2018-01-31
kiramt
JAL-2759 test renaming
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2018-01-31
kiramt
JAL-2759 minor refactor to hiding bitsets
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2018-01-30
gmungoc
JAL-2069 menu item now "Variable colour..." to hint...
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2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
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2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
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2018-01-30
kiramt
JAL-2759 Add missing hiddenColumns empty check
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2018-01-30
kiramt
JAL-2759 updateForDeletedRegion no longer needed
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2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
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2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
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2018-01-30
kiramt
JAL-2759 Rationalising hidden cols cursor, and sorting...
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2018-01-30
kiramt
JAL-2759 comment
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2018-01-30
kiramt
JAL-2759 Additional tests and tweaks to numColumns...
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2018-01-30
kiramt
JAL-2759 Keep numColumns up to date
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2018-01-29
kiramt
JAL-2759 remove unneeded cast
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2018-01-29
kiramt
Merge branch 'feature/JAL-2759' of https://source.jalvi...
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2018-01-29
kiramt
JAL-2759 Combine findRegionForColumn code in HiddenColu...
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2018-01-29
gmungoc
Merge branch 'feature/JAL-2759' of https://source.jalvi...
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2018-01-29
gmungoc
JAL-1270 testPadGaps() added
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2018-01-29
kiramt
JAL-2759 numColumns reset
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2018-01-29
kiramt
JAL-2759 remove redundant hiddenColumns.clear()
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2018-01-29
kiramt
JAL-2759 Tidy
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2018-01-29
kiramt
JAL-2759 make a new cursor instead of resetting, update...
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2018-01-29
kiramt
JAL-2759 Fix unintended type change
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2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressio...
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2018-01-26
Jim Procter
Merge branch 'releases/Release_2_10_3_Branch' into...
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2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
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2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2018-01-26
kiramt
JAL-2778 tightened up use of resetAlignmentDims
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2018-01-25
kiramt
JAL-2778 Tidy
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2018-01-25
kiramt
JAL-2778 added JAL-2851 fix to avoid confusion
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2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
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2018-01-24
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
releases/Release_2_10_3_Branch
Release_2_10_3b1
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2018-01-24
Jim Procter
JAL-2858 update release date and rejig what's new message
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2018-01-23
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2018-01-23
Jim Procter
JAL-2858 fix what's new
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2018-01-23
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2018-01-23
Jim Procter
JAL-2858 update latest release notes link in TOC
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2018-01-23
Jim Procter
JAL-2859 release notes
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2018-01-23
Jim Procter
JAL-2858 update release notes
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2018-01-22
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
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2018-01-22
Jim Procter
JAL-2858 release notes for 2.10.3b1 (including revision...
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2018-01-22
Jim Procter
JAL-2858 bump version number for 2.10.3b1
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2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
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2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
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2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
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2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
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2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
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2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
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2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
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2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
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2018-01-18
kiramt
JAL-2759 Updated test
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2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
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2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
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2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
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2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
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2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
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2018-01-16
kiramt
JAL-2759 Unit test for PopupMenu hideInsertions code
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2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
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2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
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2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
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2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
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2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
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2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
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2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
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2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
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2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
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2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
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2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
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2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
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2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
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2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
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2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
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2018-01-15
kiramt
JAL-2759 Updated HiddenColumnsTest::testIsVisible follo...
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2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
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2018-01-15
kiramt
JAL-2759 Updates following review
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2018-01-12
kiramt
JAL-2886 trivial unit test fix
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2018-01-11
kiramt
Merge remote-tracking branch 'origin/task/JAL-2662...
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2018-01-11
kiramt
JAL-2662 Updated README
task/JAL-2662
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2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
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2018-01-10
kiramt
JAL-797: Added keybindings so that ctrl- or cmd-W close...
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2018-01-09
gmungoc
JAL-2843 test roundtrip of feature colours and filters...
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