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jalview.git
2023-07-13 James ProcterJAL-4229 beginnings of test to verify VARNA and Helices... bug/JAL-4229_varna_helix_mapping_offby1 commit | commitdiff | tree | snapshot
2023-07-13 James ProcterJAL-4227 accept extended WUSS in filter commit | commitdiff | tree | snapshot
2023-07-13 James ProcterJAL-4227 failing test for extended WUSS not filtered... commit | commitdiff | tree | snapshot
2023-07-13 James ProcterJAL-4227 SAM RF00162 round trip test - currently fails commit | commitdiff | tree | snapshot
2023-07-12 James ProcterJAL-4223 - test and patch to ensure numbering matches... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterJAL-4217 JAL-629 built in 25s time out waiting for... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterJAL-4090 update 2.11.3.0 release notes (with in-progres... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterMerge branch 'patch/JAL-4119_sifts_ftp_split' into... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterMerge branch 'develop' into patch/JAL-4195_cli_eps_expo... patch/JAL-4195_cli_eps_export_npe commit | commitdiff | tree | snapshot
2023-07-07 James ProcterJAL-4195 add exception handling for all other CommandsT... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterJAL-4221 update description when transferring annotatio... commit | commitdiff | tree | snapshot
2023-07-07 James ProcterJAL-629 even more console debug for --structureviewer... commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-629 liberal defensive coding, comments about refact... commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin... commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn... commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-4217 interruptedExceptions should also break any... commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-2292 verify mixed case alignment actually aligns commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... commit | commitdiff | tree | snapshot
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... commit | commitdiff | tree | snapshot
2023-07-05 James ProcterMerge branch 'patch/JAL-2292_caseSensitivePAE' into... commit | commitdiff | tree | snapshot
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection... commit | commitdiff | tree | snapshot
2023-07-04 James ProcterMerge branch 'merge/from_2_11_2_7_to_2_11_3_0' into... commit | commitdiff | tree | snapshot
2023-07-04 James ProcterJAL-4117 JAL-1551 source licensing commit | commitdiff | tree | snapshot
2023-07-04 James ProcterJAL-4117 Fri June 30th release of 2.11.2.7 with Jalview... commit | commitdiff | tree | snapshot
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of... commit | commitdiff | tree | snapshot
2023-06-30 James ProcterJAL-4216 release notes commit | commitdiff | tree | snapshot
2023-06-30 James ProcterJAL-4216 compute size of annotation using start/end... commit | commitdiff | tree | snapshot
2023-06-30 James ProcterMerge branch 'task/JAL-4001_Plausible_API' into develop commit | commitdiff | tree | snapshot
2023-06-30 Ben SoaresJAL-4001 Added a random id to User-Agent to ensure... task/JAL-4001_Plausible_API commit | commitdiff | tree | snapshot
2023-06-29 James ProcterMerge branch 'task/JAL-4001_Plausible_API' into develop commit | commitdiff | tree | snapshot
2023-06-29 James ProcterJAL-4117 JAL-4001 plausible analytics release notes... commit | commitdiff | tree | snapshot
2023-06-29 James ProcterJAL-4090 update from 2.11.2.7 JAL-4117 - version bump... commit | commitdiff | tree | snapshot
2023-06-29 James ProcterJAL-4001 analytics url provided by https://jalview... commit | commitdiff | tree | snapshot
2023-06-28 Ben SoaresJAL-4001 change Plausible discovery URL commit | commitdiff | tree | snapshot
2023-06-28 Ben SoaresJAL-4001 remove headless code from analytics commit | commitdiff | tree | snapshot
2023-06-28 Ben SoaresJAL-4001 Remove analytics for --headless mode commit | commitdiff | tree | snapshot
2023-06-27 Ben SoaresJAL-4001 Added useful props information commit | commitdiff | tree | snapshot
2023-06-22 Ben SoaresMerge branch 'develop' into task/JAL-4001_Plausible_API commit | commitdiff | tree | snapshot
2023-06-22 Ben SoaresJAL-4001 Fix default API url commit | commitdiff | tree | snapshot
2023-06-22 James ProcterJAL-4213 don’t pass active selection when actioning... patch/JAL-4213_addref_with_selection commit | commitdiff | tree | snapshot
2023-06-22 James ProcterJAL-4213 - document the addReferenceAnnotations method... commit | commitdiff | tree | snapshot
2023-06-22 Ben SoaresJAL-4001 Added 'installation' property. commit | commitdiff | tree | snapshot
2023-06-22 James ProcterJAL-2292 - ensure mapping is built for equal symbols... patch/JAL-2292_caseSensitivePAE commit | commitdiff | tree | snapshot
2023-06-22 Ben SoaresJAL-4001 Added lookup to https://jalview.org/config... commit | commitdiff | tree | snapshot
2023-06-22 Ben SoaresJAL-4019 corrected to '>' to '>=' for percentage compar... bug/JAL-4125_flatlaf_quithandler_external_structureviewers_not_closed commit | commitdiff | tree | snapshot
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising commit | commitdiff | tree | snapshot
2023-06-21 Ben SoaresJAL-4001 Rationalise user-agent string into HttpUtils commit | commitdiff | tree | snapshot
2023-06-21 Ben SoaresJAL-4001 Change wording from google to plausible or... commit | commitdiff | tree | snapshot
2023-06-20 Ben SoaresJAL-4001 rename the init method commit | commitdiff | tree | snapshot
2023-06-20 Ben SoaresJAL-4001 Working Plausible analytics commit | commitdiff | tree | snapshot
2023-06-20 Ben SoaresJAL-4001 Plausible class commit | commitdiff | tree | snapshot
2023-06-20 Ben SoaresJAL-4001 Added a genuine client_id (from gtag). Added... task/JAL-4001_migrate_googleanalytics_to_GA4 commit | commitdiff | tree | snapshot
2023-06-17 Ben SoaresJAL-4001 Check --nousagestats before doing analytics... commit | commitdiff | tree | snapshot
2023-06-16 Ben SoaresJAL-4001 Add a _geo=1 to query string and JSON. Add... commit | commitdiff | tree | snapshot
2023-06-16 Ben SoaresJAL-4001 Remove jgoogleanalytics code and jar commit | commitdiff | tree | snapshot
2023-06-16 Ben SoaresJAL-4001 make page_location the same encoding as the... commit | commitdiff | tree | snapshot
2023-06-15 Ben SoaresJAL-4001 Changed for Java 8 compatibility commit | commitdiff | tree | snapshot
2023-06-14 Ben SoaresJAL-4001 Trying to see extra information in GA dashboard commit | commitdiff | tree | snapshot
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-13 Ben SoaresJAL-3599 Tidyup for all OS to use ScheduledExecutor commit | commitdiff | tree | snapshot
2023-06-12 Ben SoaresJAL-3599 replaced a build dependency for jalviewjsLaunc... commit | commitdiff | tree | snapshot
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. ScheduledExecutor timeout... commit | commitdiff | tree | snapshot
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. --timeout not working yet commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 fixed placement of 'First Run' file for chromi... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 --no-sandbox --disable-gpu and Thorium flatpak... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 STDOUT and STDERR saved and sent to System... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 Not redirecting STDOUT or STDERR just for... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when anything commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when failed commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 increase real and virtual time chrome runs... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresJAL-4001 Only send defaultParams for application_launch... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterMerge branch 'develop' into patch/JAL-4196_structure_vi... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterJAL-4196 make very sure we avoid CME by defensively... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterJAL-4196 report an error if structure view doesn’t... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresJAL-3416 FlatLaf SystemInfo failing in JalviewJS. ... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 Javadoc for the method to use commit | commitdiff | tree | snapshot
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... commit | commitdiff | tree | snapshot
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... commit | commitdiff | tree | snapshot
2023-06-07 James ProcterJAL-4195 catch thrown exceptions (if any) during image... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... improvement/JAL-4193_cl_arg_prevent_startup_file commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 Added more params for application_launch commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 removed a test param commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin... commit | commitdiff | tree | snapshot
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4160 JAL-4195 wait around until alignFrame calculat... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-1551 formatting and javadoc for ArgParser rather... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-629 - remove TODO from jalview.bin.Jalview since... commit | commitdiff | tree | snapshot
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