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jalview.git
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2759 Fix errant RangeElementsIterator (unit tests... commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review commit | commitdiff | tree | snapshot
2018-02-01 kiramtJAL-2759 Added in JAL-2851 fix commit | commitdiff | tree | snapshot
2018-02-01 kiramtJAL-2759 use right iterator for getVisibleColsIterator commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 Generalised HiddenColsIterator naming commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 test renaming commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 comment commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Keep numColumns up to date commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 remove unneeded cast commit | commitdiff | tree | snapshot
2018-01-29 kiramtMerge branch 'feature/JAL-2759' of https://source.jalvi... commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... commit | commitdiff | tree | snapshot
2018-01-29 gmungocMerge branch 'feature/JAL-2759' of https://source.jalvi... commit | commitdiff | tree | snapshot
2018-01-29 gmungocJAL-1270 testPadGaps() added commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 numColumns reset commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear() commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Tidy commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Fix unintended type change commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterJAL-2858 update release date and rejig what's new message commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 fix what's new commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update latest release notes link in TOC commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2859 release notes commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update release notes commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 release notes for 2.10.3b1 (including revision... commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 bump version number for 2.10.3b1 commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 Updated test commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 unit tests (incomplete) commit | commitdiff | tree | snapshot
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Minor doc and naming changes commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updates following review commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2018-01-11 kiramtJAL-2662 Updated README task/JAL-2662 commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 release notes commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
 commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 fix commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2740 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2827 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2842 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-24 kiramtJAL-2759 update benchmark code commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2842 JAL-2759 change to SeqPanel moveCursor commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 code tidy commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 performance tweaks commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call commit | commitdiff | tree | snapshot
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 only allow InstallAnywhere launches with versi... commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 patch path for InstallAnywhere build. Webstart... commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 reinstate change from develop (JAL-2636) someh... commit | commitdiff | tree | snapshot
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