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jalview.git
2017-03-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-653_JAL-1766_htslib_refseqsupport commit | commitdiff | tree | snapshot
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-03-20 gmungocJAL-2446 FeatureStore with NCList - work in progress commit | commitdiff | tree | snapshot
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into... commit | commitdiff | tree | snapshot
2017-03-20 kiramtJAL-2388 Comment typo commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 ViewportRanges unit test commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterMerge branch 'merges/develop_JAL2295setChimeraAttribute... commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterJAL-1933 refactor parameter for code clarity commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Unit test update commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applet update for overview panel commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq commit | commitdiff | tree | snapshot
2017-03-15 kiramtJAL-2388 Unit tests and tidies commit | commitdiff | tree | snapshot
2017-03-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 Working overview panel commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2295 avoid quotes breaking attribute value parsing commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further... commit | commitdiff | tree | snapshot
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Additional unit tests commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Missed commit commit | commitdiff | tree | snapshot
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 Messed something up, merged conflicts commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden... commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Dependency tidy commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui... commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... commit | commitdiff | tree | snapshot
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition commit | commitdiff | tree | snapshot
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... commit | commitdiff | tree | snapshot
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu... commit | commitdiff | tree | snapshot
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... commit | commitdiff | tree | snapshot
2017-03-01 kiramtJAL-2388 Reverted to previous commit | commitdiff | tree | snapshot
2017-03-01 gmungocJAL-1264 smarter way to skip autocalc'd annotations... commit | commitdiff | tree | snapshot
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... commit | commitdiff | tree | snapshot
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2388 Removing sources of non-determinism in unit... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Minor refactoring commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Unit tests take 2 commit | commitdiff | tree | snapshot
2017-02-23 kiramtJAL-2388 Unit tests for columns, take 1 commit | commitdiff | tree | snapshot
2017-02-23 kiramtJAL-2388 Unit tests in progress commit | commitdiff | tree | snapshot
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into commit | commitdiff | tree | snapshot
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow commit | commitdiff | tree | snapshot
2017-02-21 kiramtJAL-2421 Unit test commit | commitdiff | tree | snapshot
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop commit | commitdiff | tree | snapshot
2017-02-17 kiramtJAL-2388 Incomplete unit tests commit | commitdiff | tree | snapshot
2017-02-17 kiramtJAL-2421 incomplete unit test commit | commitdiff | tree | snapshot
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and... commit | commitdiff | tree | snapshot
2017-02-16 Jim ProcterMerge branch 'bug/JAL-2374_JAL-2419_overlappinggroups_c... commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu commit | commitdiff | tree | snapshot
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to... commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 tests for SequenceGroup.contains commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi... commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 new contains methods for seq and seq,apos commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 javadoc - qualify that sequence argument to... commit | commitdiff | tree | snapshot
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface... commit | commitdiff | tree | snapshot
2017-02-10 gmungocJAL-2371 small move of code, typo correction commit | commitdiff | tree | snapshot
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel commit | commitdiff | tree | snapshot
2017-02-09 Jim ProcterMerge branch 'features/JAL-2316' into develop commit | commitdiff | tree | snapshot
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316 commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2401 tweaked button text, added Spanish commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2371 no test for lower case consensus as not expect... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is... commit | commitdiff | tree | snapshot
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2371 skip upper-casing consensus as it already is commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 set initial selection group alignment context commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in... commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2316 tidying preferences help page commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2316 tidied up documentation for Links tab commit | commitdiff | tree | snapshot
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... commit | commitdiff | tree | snapshot
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for... commit | commitdiff | tree | snapshot
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services... commit | commitdiff | tree | snapshot
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme... commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2379 removed unused commented code commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2397 flag provided for 2.10.1 PCA gap calculation... commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2398 include 'compatibility mode' for C->R score... commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculat... commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2397 PCA gap cost uses last column of score matrix commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2398 corrected entry for C->R in Blosum62 matrix commit | commitdiff | tree | snapshot
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix commit | commitdiff | tree | snapshot
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