Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / analysis /
drwxr-xr-x   ..
-rwxr-xr-x 22818 AAFrequency.java
-rwxr-xr-x 26561 AlignSeq.java
-rw-r--r-- 8184 AlignmentAnnotationUtils.java
-rwxr-xr-x 23322 AlignmentSorter.java
-rw-r--r-- 87998 AlignmentUtils.java
-rw-r--r-- 10838 AnnotationSorter.java
-rw-r--r-- 3467 AverageDistanceTree.java
-rw-r--r-- 3750 CodingUtils.java
-rw-r--r-- 3103 CodonComparator.java
-rwxr-xr-x 22988 Conservation.java
-rw-r--r-- 37123 CrossRef.java
-rw-r--r-- 29158 Dna.java
-rw-r--r-- 17816 Finder.java
-rw-r--r-- 2105 GeneticCodeI.java
-rw-r--r-- 12129 GeneticCodes.java
-rw-r--r-- 11087 Grouping.java
-rw-r--r-- 3426 NJTree.java
-rwxr-xr-x 6598 PCA.java
-rw-r--r-- 5476 ParseProperties.java
-rw-r--r-- 12094 Rna.java
-rw-r--r-- 6211 SecStrConsensus.java
-rwxr-xr-x 8739 SeqsetUtils.java
-rwxr-xr-x 9225 SequenceIdMatcher.java
-rw-r--r-- 13139 StructureFrequency.java
-rw-r--r-- 10019 TreeBuilder.java
-rw-r--r-- 15084 TreeModel.java
-rw-r--r-- 1300 WUSSParseException.java
drwxr-xr-x - scoremodels