Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / datamodel /
drwxr-xr-x   ..
-rwxr-xr-x 1075 ASequence.java
-rwxr-xr-x 1039 ASequenceI.java
-rw-r--r-- 1787 AlignExportSettingsAdapter.java
-rw-r--r-- 3202 AlignedCodon.java
-rw-r--r-- 20693 AlignedCodonFrame.java
-rwxr-xr-x 47042 Alignment.java
-rwxr-xr-x 45744 AlignmentAnnotation.java
-rw-r--r-- 1676 AlignmentExportData.java
-rwxr-xr-x 17410 AlignmentI.java
-rwxr-xr-x 7288 AlignmentOrder.java
-rw-r--r-- 36621 AlignmentView.java
-rw-r--r-- 1503 AllColsCollection.java
-rw-r--r-- 1724 AllColsIterator.java
-rw-r--r-- 1669 AllRowsCollection.java
-rw-r--r-- 1756 AllRowsIterator.java
-rw-r--r-- 2067 AnnotatedCollectionI.java
-rwxr-xr-x 5572 Annotation.java
-rwxr-xr-x 5355 BinaryNode.java
-rwxr-xr-x 4277 BinarySequence.java
-rw-r--r-- 10986 CigarArray.java
-rw-r--r-- 19850 CigarBase.java
-rw-r--r-- 1696 CigarCigar.java
-rw-r--r-- 1172 CigarSimple.java
-rw-r--r-- 18303 ColumnSelection.java
-rw-r--r-- 1002 ContiguousI.java
-rwxr-xr-x 9671 DBRefEntry.java
-rwxr-xr-x 5529 DBRefSource.java
-rw-r--r-- 2124 FeatureProperties.java
-rw-r--r-- 1548 GeneLociI.java
-rw-r--r-- 2994 GeneLocus.java
-rwxr-xr-x 2069 GraphLine.java
-rw-r--r-- 30003 HiddenColumns.java
-rw-r--r-- 6503 HiddenColumnsCursor.java
-rw-r--r-- 1344 HiddenCursorPosition.java
-rwxr-xr-x 10405 HiddenSequences.java
-rw-r--r-- 1107 IncompleteCodonException.java
-rw-r--r-- 9323 MappedFeatures.java
-rw-r--r-- 17188 Mapping.java
-rw-r--r-- 1911 MappingType.java
-rw-r--r-- 999 NodeTransformI.java
-rwxr-xr-x 10677 PDBEntry.java
-rw-r--r-- 2191 Point.java
-rw-r--r-- 3645 Profile.java
-rw-r--r-- 2370 ProfileI.java
-rw-r--r-- 1618 Profiles.java
-rw-r--r-- 997 ProfilesI.java
-rwxr-xr-x 1426 Provenance.java
-rwxr-xr-x 1331 ProvenanceEntry.java
-rw-r--r-- 1621 Range.java
-rw-r--r-- 2490 RangeElementsIterator.java
-rw-r--r-- 3481 RangeIterator.java
-rw-r--r-- 14716 ResidueCount.java
-rw-r--r-- 1677 RnaViewerModel.java
-rw-r--r-- 1654 SearchResultMatchI.java
-rwxr-xr-x 9052 SearchResults.java
-rw-r--r-- 3535 SearchResultsI.java
-rw-r--r-- 1502 SecondaryStructureAnnotation.java
-rw-r--r-- 18643 SeqCigar.java
-rwxr-xr-x 47863 Sequence.java
-rw-r--r-- 2373 SequenceCollectionI.java
-rw-r--r-- 4251 SequenceCursor.java
-rw-r--r-- 1771 SequenceDummy.java
-rwxr-xr-x 18739 SequenceFeature.java
-rwxr-xr-x 34069 SequenceGroup.java
-rwxr-xr-x 16174 SequenceI.java
-rwxr-xr-x 4061 SequenceNode.java
-rwxr-xr-x 2362 SequencePoint.java
-rw-r--r-- 4063 StartRegionIterator.java
-rw-r--r-- 4401 StructureViewerModel.java
-rw-r--r-- 1461 VisibleColsCollection.java
-rw-r--r-- 2918 VisibleContigsIterator.java
-rw-r--r-- 1584 VisibleRowsCollection.java
-rw-r--r-- 2335 VisibleRowsIterator.java
drwxr-xr-x - features