source.jalview.org Git - jalview.git/tree - forester/java/classes/org/forester/surfacing/

drwxr-xr-x		..
-rw-r--r--	2178	AdjactantDirectedBinaryDomainCombination.class	blob \| history \| raw
-rw-r--r--	1341	AdjactantDirectedCombinableDomains.class	blob \| history \| raw
-rw-r--r--	876	BasicBinaryDomainCombination$1.class	blob \| history \| raw
-rw-r--r--	5211	BasicBinaryDomainCombination.class	blob \| history \| raw
-rw-r--r--	4758	BasicCombinableDomains.class	blob \| history \| raw
-rw-r--r--	7272	BasicDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1063	BasicGenomeWideCombinableDomains$1.class	blob \| history \| raw
-rw-r--r--	1052	BasicGenomeWideCombinableDomains$2.class	blob \| history \| raw
-rw-r--r--	1060	BasicGenomeWideCombinableDomains$3.class	blob \| history \| raw
-rw-r--r--	10849	BasicGenomeWideCombinableDomains.class	blob \| history \| raw
-rw-r--r--	1158	CombinableDomains.class	blob \| history \| raw
-rw-r--r--	1044	CombinationsBasedPairwiseDomainSimilarity.class	blob \| history \| raw
-rw-r--r--	1578	CombinationsBasedPairwiseDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1133	CountsBasedPairwiseDomainSimilarity.class	blob \| history \| raw
-rw-r--r--	2122	DirectedBinaryDomainCombination.class	blob \| history \| raw
-rw-r--r--	1305	DirectedCombinableDomains.class	blob \| history \| raw
-rw-r--r--	6969	DomainArchitectureBasedGenomeSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1177	DomainCountsBasedPairwiseSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1021	DomainCountsDifferenceUtil$1.class	blob \| history \| raw
-rw-r--r--	1372	DomainCountsDifferenceUtil$COPY_CALCULATION_MODE.class	blob \| history \| raw
-rw-r--r--	22900	DomainCountsDifferenceUtil.class	blob \| history \| raw
-rw-r--r--	3743	DomainLengths.class	blob \| history \| raw
-rw-r--r--	5379	DomainLengthsTable.class	blob \| history \| raw
-rw-r--r--	26327	DomainParsimonyCalculator.class	blob \| history \| raw
-rw-r--r--	943	DomainSimilarity$1.class	blob \| history \| raw
-rw-r--r--	832	DomainSimilarity$2.class	blob \| history \| raw
-rw-r--r--	1274	DomainSimilarity$DomainSimilarityScoring.class	blob \| history \| raw
-rw-r--r--	1620	DomainSimilarity$DomainSimilaritySortField.class	blob \| history \| raw
-rw-r--r--	1151	DomainSimilarity$PRINT_OPTION.class	blob \| history \| raw
-rw-r--r--	1191	DomainSimilarity$ValueComparator.class	blob \| history \| raw
-rw-r--r--	15622	DomainSimilarity.class	blob \| history \| raw
-rw-r--r--	1304	DomainSimilarityCalculator$Detailedness.class	blob \| history \| raw
-rw-r--r--	1256	DomainSimilarityCalculator$GoAnnotationOutput.class	blob \| history \| raw
-rw-r--r--	728	DomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1547	GenomeWideCombinableDomains$GenomeWideCombinableDomainsSortOrder.class	blob \| history \| raw
-rw-r--r--	1464	GenomeWideCombinableDomains.class	blob \| history \| raw
-rw-r--r--	803	MappingResults.class	blob \| history \| raw
-rw-r--r--	225	PairwiseDomainSimilarity.class	blob \| history \| raw
-rw-r--r--	340	PairwiseDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	840	PairwiseGenomeComparator$1.class	blob \| history \| raw
-rw-r--r--	11093	PairwiseGenomeComparator.class	blob \| history \| raw
-rw-r--r--	5275	PrintableSpeciesSpecificDcData.class	blob \| history \| raw
-rw-r--r--	1229	ProteinCountsBasedPairwiseDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1602	SimpleDomain.class	blob \| history \| raw
-rw-r--r--	905	SpeciesSpecificDcData.class	blob \| history \| raw
-rw-r--r--	1191	SurfacingConstants.class	blob \| history \| raw
-rw-r--r--	868	SurfacingUtil$1.class	blob \| history \| raw
-rw-r--r--	868	SurfacingUtil$2.class	blob \| history \| raw
-rw-r--r--	889	SurfacingUtil$DomainComparator.class	blob \| history \| raw
-rw-r--r--	92702	SurfacingUtil.class	blob \| history \| raw
-rw-r--r--	77864	TestSurfacing.class	blob \| history \| raw