source.jalview.org Git - jalview.git/tree - forester/java/classes/org/forester/surfacing/

drwxr-xr-x		..
-rw-r--r--	2228	AdjactantDirectedBinaryDomainCombination.class	blob \| history \| raw
-rw-r--r--	1341	AdjactantDirectedCombinableDomains.class	blob \| history \| raw
-rw-r--r--	873	BasicBinaryDomainCombination$1.class	blob \| history \| raw
-rw-r--r--	5241	BasicBinaryDomainCombination.class	blob \| history \| raw
-rw-r--r--	4753	BasicCombinableDomains.class	blob \| history \| raw
-rw-r--r--	7392	BasicDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1084	BasicGenomeWideCombinableDomains$1.class	blob \| history \| raw
-rw-r--r--	1073	BasicGenomeWideCombinableDomains$2.class	blob \| history \| raw
-rw-r--r--	1081	BasicGenomeWideCombinableDomains$3.class	blob \| history \| raw
-rw-r--r--	10857	BasicGenomeWideCombinableDomains.class	blob \| history \| raw
-rw-r--r--	1158	CombinableDomains.class	blob \| history \| raw
-rw-r--r--	1044	CombinationsBasedPairwiseDomainSimilarity.class	blob \| history \| raw
-rw-r--r--	1578	CombinationsBasedPairwiseDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1133	CountsBasedPairwiseDomainSimilarity.class	blob \| history \| raw
-rw-r--r--	2172	DirectedBinaryDomainCombination.class	blob \| history \| raw
-rw-r--r--	1305	DirectedCombinableDomains.class	blob \| history \| raw
-rw-r--r--	6977	DomainArchitectureBasedGenomeSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1202	DomainCountsBasedPairwiseSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1018	DomainCountsDifferenceUtil$1.class	blob \| history \| raw
-rw-r--r--	1366	DomainCountsDifferenceUtil$COPY_CALCULATION_MODE.class	blob \| history \| raw
-rw-r--r--	22965	DomainCountsDifferenceUtil.class	blob \| history \| raw
-rw-r--r--	3743	DomainLengths.class	blob \| history \| raw
-rw-r--r--	5374	DomainLengthsTable.class	blob \| history \| raw
-rw-r--r--	26431	DomainParsimonyCalculator.class	blob \| history \| raw
-rw-r--r--	940	DomainSimilarity$1.class	blob \| history \| raw
-rw-r--r--	829	DomainSimilarity$2.class	blob \| history \| raw
-rw-r--r--	1268	DomainSimilarity$DomainSimilarityScoring.class	blob \| history \| raw
-rw-r--r--	1614	DomainSimilarity$DomainSimilaritySortField.class	blob \| history \| raw
-rw-r--r--	1145	DomainSimilarity$PRINT_OPTION.class	blob \| history \| raw
-rw-r--r--	1191	DomainSimilarity$ValueComparator.class	blob \| history \| raw
-rw-r--r--	15715	DomainSimilarity.class	blob \| history \| raw
-rw-r--r--	1298	DomainSimilarityCalculator$Detailedness.class	blob \| history \| raw
-rw-r--r--	1250	DomainSimilarityCalculator$GoAnnotationOutput.class	blob \| history \| raw
-rw-r--r--	728	DomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1541	GenomeWideCombinableDomains$GenomeWideCombinableDomainsSortOrder.class	blob \| history \| raw
-rw-r--r--	1464	GenomeWideCombinableDomains.class	blob \| history \| raw
-rw-r--r--	803	MappingResults.class	blob \| history \| raw
-rw-r--r--	225	PairwiseDomainSimilarity.class	blob \| history \| raw
-rw-r--r--	340	PairwiseDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	837	PairwiseGenomeComparator$1.class	blob \| history \| raw
-rw-r--r--	11162	PairwiseGenomeComparator.class	blob \| history \| raw
-rw-r--r--	5323	PrintableSpeciesSpecificDcData.class	blob \| history \| raw
-rw-r--r--	1258	ProteinCountsBasedPairwiseDomainSimilarityCalculator.class	blob \| history \| raw
-rw-r--r--	1602	SimpleDomain.class	blob \| history \| raw
-rw-r--r--	905	SpeciesSpecificDcData.class	blob \| history \| raw
-rw-r--r--	1188	SurfacingConstants.class	blob \| history \| raw
-rw-r--r--	873	SurfacingUtil$1.class	blob \| history \| raw
-rw-r--r--	865	SurfacingUtil$2.class	blob \| history \| raw
-rw-r--r--	889	SurfacingUtil$DomainComparator.class	blob \| history \| raw
-rw-r--r--	93366	SurfacingUtil.class	blob \| history \| raw
-rw-r--r--	78252	TestSurfacing.class	blob \| history \| raw