source.jalview.org Git - jalview.git/tree - forester/java/src/org/forester/surfacing/

drwxr-xr-x		..
-rw-r--r--	2400	AdjactantDirectedBinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	1990	AdjactantDirectedCombinableDomains.java	blob \| history \| raw
-rw-r--r--	6217	BasicBinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	6492	BasicCombinableDomains.java	blob \| history \| raw
-rw-r--r--	7493	BasicDomain.java	blob \| history \| raw
-rw-r--r--	12921	BasicDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	23811	BasicGenomeWideCombinableDomains.java	blob \| history \| raw
-rw-r--r--	5716	BasicProtein.java	blob \| history \| raw
-rw-r--r--	2684	BasicSpecies.java	blob \| history \| raw
-rw-r--r--	1937	BinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	4252	CombinableDomains.java	blob \| history \| raw
-rw-r--r--	2485	CombinationsBasedPairwiseDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	2423	CombinationsBasedPairwiseDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	2428	CountsBasedPairwiseDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	2347	DirectedBinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	1954	DirectedCombinableDomains.java	blob \| history \| raw
-rw-r--r--	1623	Domain.java	blob \| history \| raw
-rw-r--r--	13996	DomainArchitectureBasedGenomeSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	1847	DomainCountsBasedPairwiseSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	46270	DomainCountsDifferenceUtil.java	blob \| history \| raw
-rw-r--r--	4721	DomainId.java	blob \| history \| raw
-rw-r--r--	5146	DomainLengths.java	blob \| history \| raw
-rw-r--r--	6276	DomainLengthsTable.java	blob \| history \| raw
-rw-r--r--	35926	DomainParsimonyCalculator.java	blob \| history \| raw
-rw-r--r--	3443	DomainSimilarity.java	blob \| history \| raw
-rw-r--r--	1876	DomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	2641	GenomeWideCombinableDomains.java	blob \| history \| raw
-rw-r--r--	1805	MappingResults.java	blob \| history \| raw
-rw-r--r--	1528	PairwiseDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	1369	PairwiseDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	22249	PairwiseGenomeComparator.java	blob \| history \| raw
-rw-r--r--	30261	PrintableDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	5883	PrintableSpeciesSpecificDomainSimilariyData.java	blob \| history \| raw
-rw-r--r--	2394	Protein.java	blob \| history \| raw
-rw-r--r--	1870	ProteinCountsBasedPairwiseDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	2494	ProteinId.java	blob \| history \| raw
-rw-r--r--	3612	SimpleDomain.java	blob \| history \| raw
-rw-r--r--	1208	Species.java	blob \| history \| raw
-rw-r--r--	1841	SpeciesSpecificDomainSimilariyData.java	blob \| history \| raw
-rw-r--r--	2779	SurfacingConstants.java	blob \| history \| raw
-rw-r--r--	137463	SurfacingUtil.java	blob \| history \| raw
-rw-r--r--	299768	TestSurfacing.java	blob \| history \| raw