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AdjactantDirectedBinaryDomainCombination.java
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AdjactantDirectedCombinableDomains.java
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BasicBinaryDomainCombination.java
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BasicCombinableDomains.java
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BasicDomainSimilarityCalculator.java
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BasicGenomeWideCombinableDomains.java
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CombinableDomains.java
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CombinationsBasedPairwiseDomainSimilarity.java
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CombinationsBasedPairwiseDomainSimilarityCalculator.java
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CountsBasedPairwiseDomainSimilarity.java
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DirectedBinaryDomainCombination.java
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DirectedCombinableDomains.java
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DomainArchitectureBasedGenomeSimilarityCalculator.java
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DomainCountsBasedPairwiseSimilarityCalculator.java
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DomainCountsDifferenceUtil.java
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DomainLengths.java
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DomainLengthsTable.java
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DomainParsimonyCalculator.java
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DomainSimilarity.java
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DomainSimilarityCalculator.java
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GenomeWideCombinableDomains.java
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MappingResults.java
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PairwiseDomainSimilarity.java
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PairwiseDomainSimilarityCalculator.java
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PairwiseGenomeComparator.java
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PrintableSpeciesSpecificDcData.java
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ProteinCountsBasedPairwiseDomainSimilarityCalculator.java
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SimpleDomain.java
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SpeciesSpecificDcData.java
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SurfacingConstants.java
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SurfacingUtil.java
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TestSurfacing.java
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