source.jalview.org Git - jalview.git/tree - forester/java/src/org/forester/surfacing/

drwxr-xr-x		..
-rw-r--r--	2398	AdjactantDirectedBinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	1988	AdjactantDirectedCombinableDomains.java	blob \| history \| raw
-rw-r--r--	6257	BasicBinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	6714	BasicCombinableDomains.java	blob \| history \| raw
-rw-r--r--	7645	BasicDomain.java	blob \| history \| raw
-rw-r--r--	13217	BasicDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	23871	BasicGenomeWideCombinableDomains.java	blob \| history \| raw
-rw-r--r--	5826	BasicProtein.java	blob \| history \| raw
-rw-r--r--	2696	BasicSpecies.java	blob \| history \| raw
-rw-r--r--	1949	BinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	4250	CombinableDomains.java	blob \| history \| raw
-rw-r--r--	2497	CombinationsBasedPairwiseDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	2435	CombinationsBasedPairwiseDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	2454	CountsBasedPairwiseDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	2345	DirectedBinaryDomainCombination.java	blob \| history \| raw
-rw-r--r--	1952	DirectedCombinableDomains.java	blob \| history \| raw
-rw-r--r--	1621	Domain.java	blob \| history \| raw
-rw-r--r--	13994	DomainArchitectureBasedGenomeSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	1859	DomainCountsBasedPairwiseSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	46703	DomainCountsDifferenceUtil.java	blob \| history \| raw
-rw-r--r--	4719	DomainId.java	blob \| history \| raw
-rw-r--r--	5144	DomainLengths.java	blob \| history \| raw
-rw-r--r--	6274	DomainLengthsTable.java	blob \| history \| raw
-rw-r--r--	35924	DomainParsimonyCalculator.java	blob \| history \| raw
-rw-r--r--	3441	DomainSimilarity.java	blob \| history \| raw
-rw-r--r--	1874	DomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	2639	GenomeWideCombinableDomains.java	blob \| history \| raw
-rw-r--r--	1803	MappingResults.java	blob \| history \| raw
-rw-r--r--	1526	PairwiseDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	1367	PairwiseDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	22336	PairwiseGenomeComparator.java	blob \| history \| raw
-rw-r--r--	30427	PrintableDomainSimilarity.java	blob \| history \| raw
-rw-r--r--	5937	PrintableSpeciesSpecificDomainSimilariyData.java	blob \| history \| raw
-rw-r--r--	2392	Protein.java	blob \| history \| raw
-rw-r--r--	1882	ProteinCountsBasedPairwiseDomainSimilarityCalculator.java	blob \| history \| raw
-rw-r--r--	2492	ProteinId.java	blob \| history \| raw
-rw-r--r--	3722	SimpleDomain.java	blob \| history \| raw
-rw-r--r--	1206	Species.java	blob \| history \| raw
-rw-r--r--	1839	SpeciesSpecificDomainSimilariyData.java	blob \| history \| raw
-rw-r--r--	2777	SurfacingConstants.java	blob \| history \| raw
-rw-r--r--	138665	SurfacingUtil.java	blob \| history \| raw
-rw-r--r--	299766	TestSurfacing.java	blob \| history \| raw