Merge remote-tracking branch 'origin/Release_2_8_1_Branch' into RNAalifold
[jalview.git] / src / com / stevesoft / pat /
drwxr-xr-x   ..
-rwxr-xr-x 576 AmpersandRule.java
-rwxr-xr-x 933 Any.java
-rwxr-xr-x 754 BackG.java
-rwxr-xr-x 1043 BackMatch.java
-rwxr-xr-x 856 BackRefRule.java
-rwxr-xr-x 945 Backup.java
-rwxr-xr-x 494 BasicStringBufferLike.java
-rwxr-xr-x 95684 Bits.java
-rwxr-xr-x 1510 Boundary.java
-rwxr-xr-x 1348 Bracket.java
-rwxr-xr-x 76834 CaseMgr.java
-rwxr-xr-x 973 ChangeRule.java
-rwxr-xr-x 569 CodeRule.java
-rwxr-xr-x 3516 Ctrl.java
-rwxr-xr-x 1199 Custom.java
-rwxr-xr-x 778 CustomEndpoint.java
-rwxr-xr-x 612 DirFileRegex.java
-rwxr-xr-x 3662 DotMulti.java
-rwxr-xr-x 1256 End.java
-rwxr-xr-x 5891 FastBracket.java
-rwxr-xr-x 3332 FastMulti.java
-rwxr-xr-x 7278 FileRegex.java
-rwxr-xr-x 1322 Group.java
-rwxr-xr-x 632 LeftRule.java
-rwxr-xr-x 1769 Multi.java
-rwxr-xr-x 519 MultiMin.java
-rwxr-xr-x 2939 Multi_stage2.java
-rwxr-xr-x 663 NoPattern.java
-rwxr-xr-x 634 NonDirFileRegex.java
-rwxr-xr-x 329 NotImplementedError.java
-rwxr-xr-x 680 NullPattern.java
-rwxr-xr-x 600 NullRule.java
-rwxr-xr-x 2366 Or.java
-rwxr-xr-x 1353 OrMark.java
-rwxr-xr-x 2364 PartialBuffer.java
-rwxr-xr-x 6393 Pattern.java
-rwxr-xr-x 355 PatternSub.java
-rwxr-xr-x 487 PopRule.java
-rwxr-xr-x 1609 Prop.java
-rwxr-xr-x 1029 Pthings.java
-rwxr-xr-x 908 PushRule.java
-rwxr-xr-x 911 RBuffer.java
-rwxr-xr-x 1850 Range.java
-rwxr-xr-x 10979 RegOpt.java
-rwxr-xr-x 6770 RegRes.java
-rwxr-xr-x 698 RegSyntax.java
-rwxr-xr-x 1018 RegSyntaxError.java
-rwxr-xr-x 50786 Regex.java
-rwxr-xr-x 6882 RegexReader.java
-rwxr-xr-x 3668 RegexTokenizer.java
-rwxr-xr-x 6632 RegexWriter.java
-rwxr-xr-x 11052 ReplaceRule.java
-rwxr-xr-x 8228 Replacer.java
-rwxr-xr-x 640 RightRule.java
-rwxr-xr-x 1400 Rthings.java
-rwxr-xr-x 700 RuleHolder.java
-rwxr-xr-x 4648 Skip.java
-rwxr-xr-x 1195 Skip2.java
-rwxr-xr-x 7121 SkipBMH.java
-rwxr-xr-x 1079 Skipped.java
-rwxr-xr-x 358 SpecialRule.java
-rwxr-xr-x 957 Start.java
-rwxr-xr-x 3432 StrPos.java
-rwxr-xr-x 1562 StringBufferLike.java
-rwxr-xr-x 1337 StringLike.java
-rwxr-xr-x 693 StringRule.java
-rwxr-xr-x 604 SubMark.java
-rwxr-xr-x 907 TransPat.java
-rwxr-xr-x 5553 Transformer.java
-rwxr-xr-x 465 UniValidator.java
-rwxr-xr-x 2478 Validator.java
-rwxr-xr-x 643 WantMoreTextReplaceRule.java
-rwxr-xr-x 1479 lookAhead.java
-rwxr-xr-x 1338 oneChar.java
-rwxr-xr-x 7261 parsePerl.java
-rwxr-xr-x 291 patInf.java
-rwxr-xr-x 3030 patInt.java
drwxr-xr-x - wrap