Merge branch 'develop' into feature/JAL-4386_calculate_tree_using_secondary_structure...
[jalview.git] / src / jalview / analysis / scoremodels /
drwxr-xr-x   ..
-rw-r--r-- 1938 DistanceScoreModel.java
-rw-r--r-- 6902 FeatureDistanceModel.java
-rw-r--r-- 6458 PIDModel.java
-rw-r--r-- 15728 ScoreMatrix.java
-rw-r--r-- 5043 ScoreModels.java
-rw-r--r-- 13322 SecondaryStructureDistanceModel.java
-rw-r--r-- 5743 SimilarityParams.java
-rw-r--r-- 2031 SimilarityScoreModel.java
-rw-r--r-- 2774 SmithWatermanModel.java