Merge branch 'patch/JAL-3750_JAL-3741_https_patch' into releases/Release_2_11_1_Branch
[jalview.git] / src / jalview / analysis /
drwxr-xr-x   ..
-rwxr-xr-x 22170 AAFrequency.java
-rwxr-xr-x 26561 AlignSeq.java
-rw-r--r-- 8184 AlignmentAnnotationUtils.java
-rwxr-xr-x 23371 AlignmentSorter.java
-rw-r--r-- 87451 AlignmentUtils.java
-rw-r--r-- 10838 AnnotationSorter.java
-rw-r--r-- 3467 AverageDistanceTree.java
-rw-r--r-- 3437 CodingUtils.java
-rw-r--r-- 3103 CodonComparator.java
-rwxr-xr-x 22852 Conservation.java
-rw-r--r-- 36503 CrossRef.java
-rw-r--r-- 29029 Dna.java
-rw-r--r-- 17798 Finder.java
-rw-r--r-- 2105 GeneticCodeI.java
-rw-r--r-- 12129 GeneticCodes.java
-rw-r--r-- 11087 Grouping.java
-rw-r--r-- 3426 NJTree.java
-rwxr-xr-x 6598 PCA.java
-rw-r--r-- 5476 ParseProperties.java
-rw-r--r-- 12094 Rna.java
-rw-r--r-- 6211 SecStrConsensus.java
-rwxr-xr-x 8739 SeqsetUtils.java
-rwxr-xr-x 9223 SequenceIdMatcher.java
-rw-r--r-- 13530 StructureFrequency.java
-rw-r--r-- 10019 TreeBuilder.java
-rw-r--r-- 15084 TreeModel.java
-rw-r--r-- 1300 WUSSParseException.java
drwxr-xr-x - scoremodels