general pairwise substitution score models for pairwise alignments and trees.
[jalview.git] / src / jalview / analysis /
drwxr-xr-x   ..
-rw-r--r-- 61 .cvsignore
-rwxr-xr-x 3969 AAFrequency.java
-rwxr-xr-x 21771 AlignSeq.java
-rwxr-xr-x 13004 AlignmentSorter.java
-rwxr-xr-x 14964 Conservation.java
-rwxr-xr-x 30344 NJTree.java
-rwxr-xr-x 6054 PCA.java
-rwxr-xr-x 7308 SeqsetUtils.java
-rwxr-xr-x 6403 SequenceIdMatcher.java