JAL-845 minor tidy / tests / javadoc tweaks
[jalview.git] / src / jalview / analysis /
drwxr-xr-x   ..
-rw-r--r-- 61 .cvsignore
-rwxr-xr-x 10529 AAFrequency.java
-rwxr-xr-x 28841 AlignSeq.java
-rw-r--r-- 7162 AlignmentAnnotationUtils.java
-rwxr-xr-x 24886 AlignmentSorter.java
-rw-r--r-- 27413 AlignmentUtils.java
-rw-r--r-- 8831 AnnotationSorter.java
-rw-r--r-- 2238 CodonComparator.java
-rwxr-xr-x 19086 Conservation.java
-rw-r--r-- 20898 CrossRef.java
-rw-r--r-- 25511 Dna.java
-rw-r--r-- 8871 Finder.java
-rw-r--r-- 8764 Grouping.java
-rw-r--r-- 26370 NJTree.java
-rwxr-xr-x 7753 PCA.java
-rw-r--r-- 6370 ParseProperties.java
-rw-r--r-- 8951 Rna.java
-rw-r--r-- 6201 SecStrConsensus.java
-rwxr-xr-x 8410 SeqsetUtils.java
-rwxr-xr-x 8654 SequenceIdMatcher.java
-rw-r--r-- 13307 StructureFrequency.java
-rw-r--r-- 1290 WUSSParseException.java
drwxr-xr-x - scoremodels