JAL-1152 with sticky annotation sort order that updates as sequences are
[jalview.git] / src / jalview / analysis /
drwxr-xr-x   ..
-rw-r--r-- 61 .cvsignore
-rwxr-xr-x 10465 AAFrequency.java
-rwxr-xr-x 27946 AlignSeq.java
-rw-r--r-- 6815 AlignmentAnnotationUtils.java
-rwxr-xr-x 24789 AlignmentSorter.java
-rw-r--r-- 4613 AlignmentUtils.java
-rw-r--r-- 5649 AnnotationSorter.java
-rwxr-xr-x 18633 Conservation.java
-rw-r--r-- 20778 CrossRef.java
-rw-r--r-- 27443 Dna.java
-rw-r--r-- 8091 Finder.java
-rw-r--r-- 8764 Grouping.java
-rw-r--r-- 26157 NJTree.java
-rwxr-xr-x 7753 PCA.java
-rw-r--r-- 6370 ParseProperties.java
-rw-r--r-- 8978 Rna.java
-rw-r--r-- 6201 SecStrConsensus.java
-rwxr-xr-x 8410 SeqsetUtils.java
-rwxr-xr-x 8518 SequenceIdMatcher.java
-rw-r--r-- 13307 StructureFrequency.java
-rw-r--r-- 1290 WUSSParseException.java
drwxr-xr-x - scoremodels