source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rwxr-xr-x	28325	AAFrequency.java	blob \| history \| raw
-rwxr-xr-x	37710	AlignSeq.java	blob \| history \| raw
-rw-r--r--	8222	AlignmentAnnotationUtils.java	blob \| history \| raw
-rwxr-xr-x	23490	AlignmentSorter.java	blob \| history \| raw
-rw-r--r--	95633	AlignmentUtils.java	blob \| history \| raw
-rw-r--r--	11602	AnnotationSorter.java	blob \| history \| raw
-rw-r--r--	9287	AverageDistanceEngine.java	blob \| history \| raw
-rw-r--r--	3453	AverageDistanceTree.java	blob \| history \| raw
-rw-r--r--	3751	CodingUtils.java	blob \| history \| raw
-rw-r--r--	3103	CodonComparator.java	blob \| history \| raw
-rw-r--r--	3624	Connectivity.java	blob \| history \| raw
-rw-r--r--	1666	ConnectivityException.java	blob \| history \| raw
-rwxr-xr-x	23061	Conservation.java	blob \| history \| raw
-rw-r--r--	37899	CrossRef.java	blob \| history \| raw
-rw-r--r--	29175	Dna.java	blob \| history \| raw
-rw-r--r--	20832	Finder.java	blob \| history \| raw
-rw-r--r--	2105	GeneticCodeI.java	blob \| history \| raw
-rw-r--r--	12253	GeneticCodes.java	blob \| history \| raw
-rw-r--r--	11111	Grouping.java	blob \| history \| raw
-rw-r--r--	3420	NJTree.java	blob \| history \| raw
-rwxr-xr-x	6592	PCA.java	blob \| history \| raw
-rwxr-xr-x	8886	PaSiMap.java	blob \| history \| raw
-rw-r--r--	5488	ParseProperties.java	blob \| history \| raw
-rw-r--r--	12142	Rna.java	blob \| history \| raw
-rw-r--r--	6211	SecStrConsensus.java	blob \| history \| raw
-rwxr-xr-x	8775	SeqsetUtils.java	blob \| history \| raw
-rwxr-xr-x	9272	SequenceIdMatcher.java	blob \| history \| raw
-rw-r--r--	13151	StructureFrequency.java	blob \| history \| raw
-rw-r--r--	4675	TreeBuilder.java	blob \| history \| raw
-rw-r--r--	6347	TreeEngine.java	blob \| history \| raw
-rw-r--r--	15084	TreeModel.java	blob \| history \| raw
-rw-r--r--	1300	WUSSParseException.java	blob \| history \| raw
-rwxr-xr-x	29811	ccAnalysis.java	blob \| history \| raw
drwxr-xr-x	-	scoremodels	tree \| history