source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rwxr-xr-x	1075	ASequence.java	blob \| history \| raw
-rwxr-xr-x	1039	ASequenceI.java	blob \| history \| raw
-rw-r--r--	1787	AlignExportSettingsAdapter.java	blob \| history \| raw
-rw-r--r--	3202	AlignedCodon.java	blob \| history \| raw
-rw-r--r--	20693	AlignedCodonFrame.java	blob \| history \| raw
-rwxr-xr-x	47042	Alignment.java	blob \| history \| raw
-rwxr-xr-x	45744	AlignmentAnnotation.java	blob \| history \| raw
-rw-r--r--	1676	AlignmentExportData.java	blob \| history \| raw
-rwxr-xr-x	17410	AlignmentI.java	blob \| history \| raw
-rwxr-xr-x	7288	AlignmentOrder.java	blob \| history \| raw
-rw-r--r--	36621	AlignmentView.java	blob \| history \| raw
-rw-r--r--	1503	AllColsCollection.java	blob \| history \| raw
-rw-r--r--	1724	AllColsIterator.java	blob \| history \| raw
-rw-r--r--	1669	AllRowsCollection.java	blob \| history \| raw
-rw-r--r--	1756	AllRowsIterator.java	blob \| history \| raw
-rw-r--r--	2067	AnnotatedCollectionI.java	blob \| history \| raw
-rwxr-xr-x	5572	Annotation.java	blob \| history \| raw
-rwxr-xr-x	5355	BinaryNode.java	blob \| history \| raw
-rwxr-xr-x	4277	BinarySequence.java	blob \| history \| raw
-rw-r--r--	10986	CigarArray.java	blob \| history \| raw
-rw-r--r--	19850	CigarBase.java	blob \| history \| raw
-rw-r--r--	1696	CigarCigar.java	blob \| history \| raw
-rw-r--r--	1172	CigarSimple.java	blob \| history \| raw
-rw-r--r--	18303	ColumnSelection.java	blob \| history \| raw
-rw-r--r--	1002	ContiguousI.java	blob \| history \| raw
-rwxr-xr-x	9671	DBRefEntry.java	blob \| history \| raw
-rwxr-xr-x	5529	DBRefSource.java	blob \| history \| raw
-rw-r--r--	2124	FeatureProperties.java	blob \| history \| raw
-rw-r--r--	1548	GeneLociI.java	blob \| history \| raw
-rw-r--r--	2994	GeneLocus.java	blob \| history \| raw
-rwxr-xr-x	2069	GraphLine.java	blob \| history \| raw
-rw-r--r--	30003	HiddenColumns.java	blob \| history \| raw
-rw-r--r--	6503	HiddenColumnsCursor.java	blob \| history \| raw
-rw-r--r--	1344	HiddenCursorPosition.java	blob \| history \| raw
-rwxr-xr-x	10405	HiddenSequences.java	blob \| history \| raw
-rw-r--r--	1107	IncompleteCodonException.java	blob \| history \| raw
-rw-r--r--	9323	MappedFeatures.java	blob \| history \| raw
-rw-r--r--	17188	Mapping.java	blob \| history \| raw
-rw-r--r--	1911	MappingType.java	blob \| history \| raw
-rw-r--r--	999	NodeTransformI.java	blob \| history \| raw
-rwxr-xr-x	10677	PDBEntry.java	blob \| history \| raw
-rw-r--r--	2191	Point.java	blob \| history \| raw
-rw-r--r--	3645	Profile.java	blob \| history \| raw
-rw-r--r--	2370	ProfileI.java	blob \| history \| raw
-rw-r--r--	1618	Profiles.java	blob \| history \| raw
-rw-r--r--	997	ProfilesI.java	blob \| history \| raw
-rwxr-xr-x	1426	Provenance.java	blob \| history \| raw
-rwxr-xr-x	1331	ProvenanceEntry.java	blob \| history \| raw
-rw-r--r--	1621	Range.java	blob \| history \| raw
-rw-r--r--	2490	RangeElementsIterator.java	blob \| history \| raw
-rw-r--r--	3481	RangeIterator.java	blob \| history \| raw
-rw-r--r--	14716	ResidueCount.java	blob \| history \| raw
-rw-r--r--	1677	RnaViewerModel.java	blob \| history \| raw
-rw-r--r--	1654	SearchResultMatchI.java	blob \| history \| raw
-rwxr-xr-x	8595	SearchResults.java	blob \| history \| raw
-rw-r--r--	2940	SearchResultsI.java	blob \| history \| raw
-rw-r--r--	1502	SecondaryStructureAnnotation.java	blob \| history \| raw
-rw-r--r--	18643	SeqCigar.java	blob \| history \| raw
-rwxr-xr-x	47863	Sequence.java	blob \| history \| raw
-rw-r--r--	2373	SequenceCollectionI.java	blob \| history \| raw
-rw-r--r--	4251	SequenceCursor.java	blob \| history \| raw
-rw-r--r--	1771	SequenceDummy.java	blob \| history \| raw
-rwxr-xr-x	18739	SequenceFeature.java	blob \| history \| raw
-rwxr-xr-x	34069	SequenceGroup.java	blob \| history \| raw
-rwxr-xr-x	16174	SequenceI.java	blob \| history \| raw
-rwxr-xr-x	4061	SequenceNode.java	blob \| history \| raw
-rwxr-xr-x	2362	SequencePoint.java	blob \| history \| raw
-rw-r--r--	4063	StartRegionIterator.java	blob \| history \| raw
-rw-r--r--	4401	StructureViewerModel.java	blob \| history \| raw
-rw-r--r--	1461	VisibleColsCollection.java	blob \| history \| raw
-rw-r--r--	2918	VisibleContigsIterator.java	blob \| history \| raw
-rw-r--r--	1584	VisibleRowsCollection.java	blob \| history \| raw
-rw-r--r--	2335	VisibleRowsIterator.java	blob \| history \| raw
drwxr-xr-x	-	features	tree \| history