source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	111	.cvsignore	blob \| history \| raw
-rwxr-xr-x	1075	ASequence.java	blob \| history \| raw
-rwxr-xr-x	1039	ASequenceI.java	blob \| history \| raw
-rw-r--r--	3202	AlignedCodon.java	blob \| history \| raw
-rw-r--r--	20756	AlignedCodonFrame.java	blob \| history \| raw
-rwxr-xr-x	47159	Alignment.java	blob \| history \| raw
-rwxr-xr-x	43553	AlignmentAnnotation.java	blob \| history \| raw
-rw-r--r--	1986	AlignmentExportData.java	blob \| history \| raw
-rwxr-xr-x	16804	AlignmentI.java	blob \| history \| raw
-rwxr-xr-x	7288	AlignmentOrder.java	blob \| history \| raw
-rw-r--r--	36735	AlignmentView.java	blob \| history \| raw
-rw-r--r--	1503	AllColsCollection.java	blob \| history \| raw
-rw-r--r--	1724	AllColsIterator.java	blob \| history \| raw
-rw-r--r--	1669	AllRowsCollection.java	blob \| history \| raw
-rw-r--r--	1756	AllRowsIterator.java	blob \| history \| raw
-rw-r--r--	2067	AnnotatedCollectionI.java	blob \| history \| raw
-rwxr-xr-x	5338	Annotation.java	blob \| history \| raw
-rwxr-xr-x	5355	BinaryNode.java	blob \| history \| raw
-rwxr-xr-x	4273	BinarySequence.java	blob \| history \| raw
-rw-r--r--	10986	CigarArray.java	blob \| history \| raw
-rw-r--r--	19850	CigarBase.java	blob \| history \| raw
-rw-r--r--	1696	CigarCigar.java	blob \| history \| raw
-rw-r--r--	1172	CigarSimple.java	blob \| history \| raw
-rw-r--r--	17954	ColumnSelection.java	blob \| history \| raw
-rw-r--r--	1002	ContiguousI.java	blob \| history \| raw
-rwxr-xr-x	8969	DBRefEntry.java	blob \| history \| raw
-rwxr-xr-x	3297	DBRefSource.java	blob \| history \| raw
-rw-r--r--	2124	FeatureProperties.java	blob \| history \| raw
-rw-r--r--	679	GeneLociI.java	blob \| history \| raw
-rwxr-xr-x	2069	GraphLine.java	blob \| history \| raw
-rw-r--r--	29848	HiddenColumns.java	blob \| history \| raw
-rw-r--r--	6503	HiddenColumnsCursor.java	blob \| history \| raw
-rw-r--r--	479	HiddenCursorPosition.java	blob \| history \| raw
-rwxr-xr-x	10405	HiddenSequences.java	blob \| history \| raw
-rw-r--r--	1107	IncompleteCodonException.java	blob \| history \| raw
-rw-r--r--	17188	Mapping.java	blob \| history \| raw
-rw-r--r--	1911	MappingType.java	blob \| history \| raw
-rw-r--r--	999	NodeTransformI.java	blob \| history \| raw
-rwxr-xr-x	10677	PDBEntry.java	blob \| history \| raw
-rw-r--r--	477	Point.java	blob \| history \| raw
-rw-r--r--	3645	Profile.java	blob \| history \| raw
-rw-r--r--	2370	ProfileI.java	blob \| history \| raw
-rw-r--r--	1618	Profiles.java	blob \| history \| raw
-rw-r--r--	997	ProfilesI.java	blob \| history \| raw
-rwxr-xr-x	1426	Provenance.java	blob \| history \| raw
-rwxr-xr-x	1331	ProvenanceEntry.java	blob \| history \| raw
-rw-r--r--	1621	Range.java	blob \| history \| raw
-rw-r--r--	1625	RangeElementsIterator.java	blob \| history \| raw
-rw-r--r--	2616	RangeIterator.java	blob \| history \| raw
-rw-r--r--	14716	ResidueCount.java	blob \| history \| raw
-rw-r--r--	1677	RnaViewerModel.java	blob \| history \| raw
-rw-r--r--	1394	SearchResultMatchI.java	blob \| history \| raw
-rwxr-xr-x	9055	SearchResults.java	blob \| history \| raw
-rw-r--r--	2955	SearchResultsI.java	blob \| history \| raw
-rw-r--r--	1502	SecondaryStructureAnnotation.java	blob \| history \| raw
-rw-r--r--	18643	SeqCigar.java	blob \| history \| raw
-rwxr-xr-x	46934	Sequence.java	blob \| history \| raw
-rw-r--r--	1950	SequenceCollectionI.java	blob \| history \| raw
-rw-r--r--	4251	SequenceCursor.java	blob \| history \| raw
-rw-r--r--	1771	SequenceDummy.java	blob \| history \| raw
-rwxr-xr-x	17723	SequenceFeature.java	blob \| history \| raw
-rwxr-xr-x	33716	SequenceGroup.java	blob \| history \| raw
-rwxr-xr-x	15716	SequenceI.java	blob \| history \| raw
-rwxr-xr-x	4061	SequenceNode.java	blob \| history \| raw
-rwxr-xr-x	2362	SequencePoint.java	blob \| history \| raw
-rw-r--r--	3198	StartRegionIterator.java	blob \| history \| raw
-rw-r--r--	4401	StructureViewerModel.java	blob \| history \| raw
-rw-r--r--	1461	VisibleColsCollection.java	blob \| history \| raw
-rw-r--r--	2053	VisibleContigsIterator.java	blob \| history \| raw
-rw-r--r--	1584	VisibleRowsCollection.java	blob \| history \| raw
-rw-r--r--	2335	VisibleRowsIterator.java	blob \| history \| raw
drwxr-xr-x	-	features	tree \| history
drwxr-xr-x	-	xdb	tree \| history