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JAL-2416 remove unused pep, dna alphabets, unused methods, code format
[jalview.git]
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src
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jalview
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datamodel
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.cvsignore
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ASequence.java
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ASequenceI.java
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AlignedCodon.java
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AlignedCodonFrame.java
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Alignment.java
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AlignmentAnnotation.java
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AlignmentExportData.java
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AlignmentI.java
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AlignmentOrder.java
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AlignmentView.java
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AnnotatedCollectionI.java
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Annotation.java
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BinaryNode.java
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BinarySequence.java
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CigarArray.java
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CigarBase.java
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CigarCigar.java
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CigarSimple.java
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ColumnSelection.java
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DBRefEntry.java
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DBRefSource.java
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FeatureProperties.java
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GraphLine.java
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HiddenSequences.java
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IncompleteCodonException.java
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Mapping.java
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MappingType.java
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NodeTransformI.java
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PDBEntry.java
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Profile.java
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ProfileI.java
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Profiles.java
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ProfilesI.java
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Provenance.java
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ProvenanceEntry.java
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ResidueCount.java
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RnaViewerModel.java
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SearchResultMatchI.java
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SearchResults.java
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SearchResultsI.java
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SecondaryStructureAnnotation.java
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SeqCigar.java
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Sequence.java
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SequenceCollectionI.java
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SequenceDummy.java
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SequenceFeature.java
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SequenceGroup.java
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SequenceI.java
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SequenceNode.java
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SequencePoint.java
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StructureViewerModel.java
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UniprotEntry.java
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UniprotFile.java
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UniprotProteinName.java
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UniprotSequence.java
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