format adapter should return AlignmentI
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8205 AlignedCodonFrame.java
-rwxr-xr-x 31753 Alignment.java
-rwxr-xr-x 28208 AlignmentAnnotation.java
-rwxr-xr-x 12972 AlignmentI.java
-rwxr-xr-x 7165 AlignmentOrder.java
-rw-r--r-- 35320 AlignmentView.java
-rw-r--r-- 1185 AnnotatedCollectionI.java
-rwxr-xr-x 3082 Annotation.java
-rwxr-xr-x 5320 BinaryNode.java
-rwxr-xr-x 4476 BinarySequence.java
-rw-r--r-- 10883 CigarArray.java
-rw-r--r-- 19188 CigarBase.java
-rw-r--r-- 1676 CigarCigar.java
-rw-r--r-- 1151 CigarSimple.java
-rw-r--r-- 29983 ColumnSelection.java
-rwxr-xr-x 4328 DBRefEntry.java
-rwxr-xr-x 3442 DBRefSource.java
-rw-r--r-- 1565 FeatureProperties.java
-rwxr-xr-x 1465 GraphLine.java
-rwxr-xr-x 6524 HiddenSequences.java
-rw-r--r-- 10433 Mapping.java
-rw-r--r-- 978 NodeTransformI.java
-rwxr-xr-x 2506 PDBEntry.java
-rwxr-xr-x 1400 Provenance.java
-rwxr-xr-x 1310 ProvenanceEntry.java
-rwxr-xr-x 4775 SearchResults.java
-rw-r--r-- 643 SecondaryStructureAnnotation.java
-rw-r--r-- 22479 SeqCigar.java
-rwxr-xr-x 26379 Sequence.java
-rw-r--r-- 1105 SequenceCollectionI.java
-rwxr-xr-x 5875 SequenceFeature.java
-rwxr-xr-x 27388 SequenceGroup.java
-rwxr-xr-x 8892 SequenceI.java
-rwxr-xr-x 4014 SequenceNode.java
-rwxr-xr-x 1456 SequencePoint.java
-rwxr-xr-x 1880 UniprotEntry.java
-rwxr-xr-x 1078 UniprotFile.java
-rwxr-xr-x 1127 UniprotProteinName.java
-rwxr-xr-x 1304 UniprotSequence.java
drwxr-xr-x - xdb