source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	111	.cvsignore	blob \| history \| raw
-rwxr-xr-x	1075	ASequence.java	blob \| history \| raw
-rwxr-xr-x	1039	ASequenceI.java	blob \| history \| raw
-rw-r--r--	3202	AlignedCodon.java	blob \| history \| raw
-rw-r--r--	20756	AlignedCodonFrame.java	blob \| history \| raw
-rwxr-xr-x	43814	Alignment.java	blob \| history \| raw
-rwxr-xr-x	39455	AlignmentAnnotation.java	blob \| history \| raw
-rw-r--r--	1986	AlignmentExportData.java	blob \| history \| raw
-rwxr-xr-x	16020	AlignmentI.java	blob \| history \| raw
-rwxr-xr-x	7288	AlignmentOrder.java	blob \| history \| raw
-rw-r--r--	36735	AlignmentView.java	blob \| history \| raw
-rw-r--r--	1503	AllColsCollection.java	blob \| history \| raw
-rw-r--r--	1724	AllColsIterator.java	blob \| history \| raw
-rw-r--r--	1669	AllRowsCollection.java	blob \| history \| raw
-rw-r--r--	1756	AllRowsIterator.java	blob \| history \| raw
-rw-r--r--	2067	AnnotatedCollectionI.java	blob \| history \| raw
-rwxr-xr-x	5338	Annotation.java	blob \| history \| raw
-rwxr-xr-x	5355	BinaryNode.java	blob \| history \| raw
-rwxr-xr-x	4273	BinarySequence.java	blob \| history \| raw
-rw-r--r--	11101	CigarArray.java	blob \| history \| raw
-rw-r--r--	19850	CigarBase.java	blob \| history \| raw
-rw-r--r--	1696	CigarCigar.java	blob \| history \| raw
-rw-r--r--	1172	CigarSimple.java	blob \| history \| raw
-rw-r--r--	17954	ColumnSelection.java	blob \| history \| raw
-rw-r--r--	137	ContiguousI.java	blob \| history \| raw
-rwxr-xr-x	8439	DBRefEntry.java	blob \| history \| raw
-rwxr-xr-x	3287	DBRefSource.java	blob \| history \| raw
-rw-r--r--	2124	FeatureProperties.java	blob \| history \| raw
-rwxr-xr-x	2069	GraphLine.java	blob \| history \| raw
-rw-r--r--	41822	HiddenColumns.java	blob \| history \| raw
-rwxr-xr-x	10405	HiddenSequences.java	blob \| history \| raw
-rw-r--r--	1107	IncompleteCodonException.java	blob \| history \| raw
-rw-r--r--	17381	Mapping.java	blob \| history \| raw
-rw-r--r--	1911	MappingType.java	blob \| history \| raw
-rw-r--r--	999	NodeTransformI.java	blob \| history \| raw
-rwxr-xr-x	10677	PDBEntry.java	blob \| history \| raw
-rw-r--r--	3645	Profile.java	blob \| history \| raw
-rw-r--r--	2370	ProfileI.java	blob \| history \| raw
-rw-r--r--	1618	Profiles.java	blob \| history \| raw
-rw-r--r--	997	ProfilesI.java	blob \| history \| raw
-rwxr-xr-x	1426	Provenance.java	blob \| history \| raw
-rwxr-xr-x	1331	ProvenanceEntry.java	blob \| history \| raw
-rw-r--r--	756	Range.java	blob \| history \| raw
-rw-r--r--	14716	ResidueCount.java	blob \| history \| raw
-rw-r--r--	1677	RnaViewerModel.java	blob \| history \| raw
-rw-r--r--	1394	SearchResultMatchI.java	blob \| history \| raw
-rwxr-xr-x	9055	SearchResults.java	blob \| history \| raw
-rw-r--r--	2955	SearchResultsI.java	blob \| history \| raw
-rw-r--r--	1502	SecondaryStructureAnnotation.java	blob \| history \| raw
-rw-r--r--	18643	SeqCigar.java	blob \| history \| raw
-rwxr-xr-x	43203	Sequence.java	blob \| history \| raw
-rw-r--r--	1950	SequenceCollectionI.java	blob \| history \| raw
-rw-r--r--	3386	SequenceCursor.java	blob \| history \| raw
-rw-r--r--	1771	SequenceDummy.java	blob \| history \| raw
-rwxr-xr-x	12080	SequenceFeature.java	blob \| history \| raw
-rwxr-xr-x	34338	SequenceGroup.java	blob \| history \| raw
-rwxr-xr-x	14522	SequenceI.java	blob \| history \| raw
-rwxr-xr-x	4061	SequenceNode.java	blob \| history \| raw
-rwxr-xr-x	1477	SequencePoint.java	blob \| history \| raw
-rw-r--r--	4401	StructureViewerModel.java	blob \| history \| raw
-rw-r--r--	1481	VisibleColsCollection.java	blob \| history \| raw
-rw-r--r--	3229	VisibleColsIterator.java	blob \| history \| raw
-rw-r--r--	1584	VisibleRowsCollection.java	blob \| history \| raw
-rw-r--r--	2335	VisibleRowsIterator.java	blob \| history \| raw
drwxr-xr-x	-	features	tree \| history
drwxr-xr-x	-	xdb	tree \| history