JAL-1628 new method to get a list of insertions in a SequenceI
[jalview.git] / src / jalview / datamodel /
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-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8240 AlignedCodonFrame.java
-rwxr-xr-x 34800 Alignment.java
-rwxr-xr-x 35376 AlignmentAnnotation.java
-rwxr-xr-x 13255 AlignmentI.java
-rwxr-xr-x 7176 AlignmentOrder.java
-rw-r--r-- 35594 AlignmentView.java
-rw-r--r-- 1517 AnnotatedCollectionI.java
-rwxr-xr-x 4604 Annotation.java
-rwxr-xr-x 5331 BinaryNode.java
-rwxr-xr-x 4487 BinarySequence.java
-rw-r--r-- 10894 CigarArray.java
-rw-r--r-- 19520 CigarBase.java
-rw-r--r-- 1687 CigarCigar.java
-rw-r--r-- 1162 CigarSimple.java
-rw-r--r-- 30109 ColumnSelection.java
-rwxr-xr-x 4339 DBRefEntry.java
-rwxr-xr-x 3453 DBRefSource.java
-rw-r--r-- 1576 FeatureProperties.java
-rwxr-xr-x 2001 GraphLine.java
-rwxr-xr-x 6616 HiddenSequences.java
-rw-r--r-- 10444 Mapping.java
-rw-r--r-- 989 NodeTransformI.java
-rwxr-xr-x 2517 PDBEntry.java
-rwxr-xr-x 1411 Provenance.java
-rwxr-xr-x 1321 ProvenanceEntry.java
-rwxr-xr-x 4786 SearchResults.java
-rw-r--r-- 1492 SecondaryStructureAnnotation.java
-rw-r--r-- 22741 SeqCigar.java
-rwxr-xr-x 27399 Sequence.java
-rw-r--r-- 1789 SequenceCollectionI.java
-rwxr-xr-x 5886 SequenceFeature.java
-rwxr-xr-x 29606 SequenceGroup.java
-rwxr-xr-x 10411 SequenceI.java
-rwxr-xr-x 4025 SequenceNode.java
-rwxr-xr-x 1467 SequencePoint.java
-rwxr-xr-x 1891 UniprotEntry.java
-rwxr-xr-x 1089 UniprotFile.java
-rwxr-xr-x 1138 UniprotProteinName.java
-rwxr-xr-x 1315 UniprotSequence.java
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