Merge branch 'improvement/JAL-1350_makegroups_markedcolumns' into merge/JAL-845_JAL...
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 1489 AlignedCodon.java
-rw-r--r-- 9199 AlignedCodonFrame.java
-rwxr-xr-x 38281 Alignment.java
-rwxr-xr-x 35464 AlignmentAnnotation.java
-rwxr-xr-x 13980 AlignmentI.java
-rwxr-xr-x 7240 AlignmentOrder.java
-rw-r--r-- 35557 AlignmentView.java
-rw-r--r-- 1517 AnnotatedCollectionI.java
-rwxr-xr-x 4604 Annotation.java
-rwxr-xr-x 5331 BinaryNode.java
-rwxr-xr-x 4487 BinarySequence.java
-rw-r--r-- 10828 CigarArray.java
-rw-r--r-- 19520 CigarBase.java
-rw-r--r-- 1687 CigarCigar.java
-rw-r--r-- 1162 CigarSimple.java
-rw-r--r-- 33552 ColumnSelection.java
-rwxr-xr-x 4339 DBRefEntry.java
-rwxr-xr-x 3453 DBRefSource.java
-rw-r--r-- 1576 FeatureProperties.java
-rwxr-xr-x 2001 GraphLine.java
-rwxr-xr-x 6616 HiddenSequences.java
-rw-r--r-- 10673 Mapping.java
-rw-r--r-- 989 NodeTransformI.java
-rwxr-xr-x 2836 PDBEntry.java
-rwxr-xr-x 1411 Provenance.java
-rwxr-xr-x 1321 ProvenanceEntry.java
-rwxr-xr-x 5219 SearchResults.java
-rw-r--r-- 1492 SecondaryStructureAnnotation.java
-rw-r--r-- 22741 SeqCigar.java
-rwxr-xr-x 27318 Sequence.java
-rw-r--r-- 1789 SequenceCollectionI.java
-rwxr-xr-x 5886 SequenceFeature.java
-rwxr-xr-x 29494 SequenceGroup.java
-rwxr-xr-x 10484 SequenceI.java
-rwxr-xr-x 4025 SequenceNode.java
-rwxr-xr-x 1467 SequencePoint.java
-rw-r--r-- 3237 StructureViewerModel.java
-rwxr-xr-x 1891 UniprotEntry.java
-rwxr-xr-x 1089 UniprotFile.java
-rwxr-xr-x 1138 UniprotProteinName.java
-rwxr-xr-x 1315 UniprotSequence.java
drwxr-xr-x - xdb