Merge branch 'develop' into task/JAL-2196pdbeProperties
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rwxr-xr-x 1075 ASequence.java
-rwxr-xr-x 1039 ASequenceI.java
-rw-r--r-- 3202 AlignedCodon.java
-rw-r--r-- 20651 AlignedCodonFrame.java
-rwxr-xr-x 44225 Alignment.java
-rwxr-xr-x 39185 AlignmentAnnotation.java
-rw-r--r-- 1986 AlignmentExportData.java
-rwxr-xr-x 15172 AlignmentI.java
-rwxr-xr-x 7250 AlignmentOrder.java
-rw-r--r-- 37101 AlignmentView.java
-rw-r--r-- 1527 AnnotatedCollectionI.java
-rwxr-xr-x 4639 Annotation.java
-rwxr-xr-x 5341 BinaryNode.java
-rwxr-xr-x 4549 BinarySequence.java
-rw-r--r-- 11114 CigarArray.java
-rw-r--r-- 19892 CigarBase.java
-rw-r--r-- 1697 CigarCigar.java
-rw-r--r-- 1172 CigarSimple.java
-rw-r--r-- 44139 ColumnSelection.java
-rwxr-xr-x 8483 DBRefEntry.java
-rwxr-xr-x 3287 DBRefSource.java
-rw-r--r-- 2127 FeatureProperties.java
-rwxr-xr-x 2011 GraphLine.java
-rwxr-xr-x 8284 HiddenSequences.java
-rw-r--r-- 1107 IncompleteCodonException.java
-rw-r--r-- 17706 Mapping.java
-rw-r--r-- 1911 MappingType.java
-rw-r--r-- 999 NodeTransformI.java
-rwxr-xr-x 10115 PDBEntry.java
-rwxr-xr-x 1426 Provenance.java
-rwxr-xr-x 1331 ProvenanceEntry.java
-rw-r--r-- 1677 RnaViewerModel.java
-rwxr-xr-x 9248 SearchResults.java
-rw-r--r-- 1502 SecondaryStructureAnnotation.java
-rw-r--r-- 18786 SeqCigar.java
-rwxr-xr-x 33606 Sequence.java
-rw-r--r-- 1814 SequenceCollectionI.java
-rw-r--r-- 1771 SequenceDummy.java
-rwxr-xr-x 11115 SequenceFeature.java
-rwxr-xr-x 30640 SequenceGroup.java
-rwxr-xr-x 12677 SequenceI.java
-rwxr-xr-x 4039 SequenceNode.java
-rwxr-xr-x 1477 SequencePoint.java
-rw-r--r-- 4401 StructureViewerModel.java
-rwxr-xr-x 2132 UniprotEntry.java
-rwxr-xr-x 1270 UniprotFile.java
-rwxr-xr-x 1336 UniprotProteinName.java
-rwxr-xr-x 1531 UniprotSequence.java
drwxr-xr-x - xdb