new method to get map of sequence positions corresponding to alignment columns
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 7381 AlignedCodonFrame.java
-rwxr-xr-x 17095 Alignment.java
-rwxr-xr-x 17271 AlignmentAnnotation.java
-rwxr-xr-x 8157 AlignmentI.java
-rwxr-xr-x 7408 AlignmentOrder.java
-rw-r--r-- 15065 AlignmentView.java
-rwxr-xr-x 2820 Annotation.java
-rwxr-xr-x 5458 BinaryNode.java
-rwxr-xr-x 3359 BinarySequence.java
-rw-r--r-- 7083 CigarArray.java
-rw-r--r-- 20381 CigarBase.java
-rw-r--r-- 1651 CigarCigar.java
-rw-r--r-- 1325 CigarSimple.java
-rw-r--r-- 24392 ColumnSelection.java
-rwxr-xr-x 3876 DBRefEntry.java
-rwxr-xr-x 3198 DBRefSource.java
-rw-r--r-- 697 FeatureProperties.java
-rwxr-xr-x 1465 GraphLine.java
-rwxr-xr-x 6281 HiddenSequences.java
-rw-r--r-- 9468 Mapping.java
-rwxr-xr-x 2346 PDBEntry.java
-rwxr-xr-x 1471 Provenance.java
-rwxr-xr-x 1372 ProvenanceEntry.java
-rwxr-xr-x 3930 SearchResults.java
-rw-r--r-- 20138 SeqCigar.java
-rwxr-xr-x 25300 Sequence.java
-rwxr-xr-x 6020 SequenceFeature.java
-rwxr-xr-x 12379 SequenceGroup.java
-rwxr-xr-x 7605 SequenceI.java
-rwxr-xr-x 3812 SequenceNode.java
-rwxr-xr-x 1464 SequencePoint.java
-rwxr-xr-x 1980 UniprotEntry.java
-rwxr-xr-x 1126 UniprotFile.java
-rwxr-xr-x 1177 UniprotProteinName.java
-rwxr-xr-x 1362 UniprotSequence.java
drwxr-xr-x - xdb