Merge remote-tracking branch 'origin/bug/JAL-2722' into portforward/JAL-2675_2102b1to2103
[jalview.git] / src / jalview / datamodel /
drwxr-xr-x   ..
-rw-r--r-- 111 .cvsignore
-rwxr-xr-x 1075 ASequence.java
-rwxr-xr-x 1039 ASequenceI.java
-rw-r--r-- 3202 AlignedCodon.java
-rw-r--r-- 20756 AlignedCodonFrame.java
-rwxr-xr-x 43814 Alignment.java
-rwxr-xr-x 39455 AlignmentAnnotation.java
-rw-r--r-- 1986 AlignmentExportData.java
-rwxr-xr-x 16020 AlignmentI.java
-rwxr-xr-x 7288 AlignmentOrder.java
-rw-r--r-- 36735 AlignmentView.java
-rw-r--r-- 1503 AllColsCollection.java
-rw-r--r-- 1724 AllColsIterator.java
-rw-r--r-- 1669 AllRowsCollection.java
-rw-r--r-- 1756 AllRowsIterator.java
-rw-r--r-- 2067 AnnotatedCollectionI.java
-rwxr-xr-x 5338 Annotation.java
-rwxr-xr-x 5355 BinaryNode.java
-rwxr-xr-x 4273 BinarySequence.java
-rw-r--r-- 11101 CigarArray.java
-rw-r--r-- 19850 CigarBase.java
-rw-r--r-- 1696 CigarCigar.java
-rw-r--r-- 1172 CigarSimple.java
-rw-r--r-- 17954 ColumnSelection.java
-rw-r--r-- 137 ContiguousI.java
-rwxr-xr-x 8439 DBRefEntry.java
-rwxr-xr-x 3287 DBRefSource.java
-rw-r--r-- 2124 FeatureProperties.java
-rwxr-xr-x 2069 GraphLine.java
-rw-r--r-- 41822 HiddenColumns.java
-rwxr-xr-x 10405 HiddenSequences.java
-rw-r--r-- 1107 IncompleteCodonException.java
-rw-r--r-- 17381 Mapping.java
-rw-r--r-- 1911 MappingType.java
-rw-r--r-- 999 NodeTransformI.java
-rwxr-xr-x 10677 PDBEntry.java
-rw-r--r-- 3645 Profile.java
-rw-r--r-- 2370 ProfileI.java
-rw-r--r-- 1618 Profiles.java
-rw-r--r-- 997 ProfilesI.java
-rwxr-xr-x 1426 Provenance.java
-rwxr-xr-x 1331 ProvenanceEntry.java
-rw-r--r-- 756 Range.java
-rw-r--r-- 14716 ResidueCount.java
-rw-r--r-- 1677 RnaViewerModel.java
-rw-r--r-- 1394 SearchResultMatchI.java
-rwxr-xr-x 9055 SearchResults.java
-rw-r--r-- 2955 SearchResultsI.java
-rw-r--r-- 1502 SecondaryStructureAnnotation.java
-rw-r--r-- 18643 SeqCigar.java
-rwxr-xr-x 43203 Sequence.java
-rw-r--r-- 1950 SequenceCollectionI.java
-rw-r--r-- 3386 SequenceCursor.java
-rw-r--r-- 1771 SequenceDummy.java
-rwxr-xr-x 12080 SequenceFeature.java
-rwxr-xr-x 34338 SequenceGroup.java
-rwxr-xr-x 14522 SequenceI.java
-rwxr-xr-x 4061 SequenceNode.java
-rwxr-xr-x 1477 SequencePoint.java
-rw-r--r-- 4401 StructureViewerModel.java
-rw-r--r-- 1481 VisibleColsCollection.java
-rw-r--r-- 3229 VisibleColsIterator.java
-rw-r--r-- 1584 VisibleRowsCollection.java
-rw-r--r-- 2335 VisibleRowsIterator.java
drwxr-xr-x - features
drwxr-xr-x - xdb