format adapter should return AlignmentI
[jalview.git] / src / jalview / gui /
drwxr-xr-x   ..
-rw-r--r-- 284 .cvsignore
-rwxr-xr-x 158411 AlignFrame.java
-rw-r--r-- 28005 AlignViewport.java
-rw-r--r-- 38676 AlignmentPanel.java
-rwxr-xr-x 17549 AnnotationColourChooser.java
-rwxr-xr-x 8379 AnnotationExporter.java
-rwxr-xr-x 26015 AnnotationLabels.java
-rwxr-xr-x 22210 AnnotationPanel.java
-rw-r--r-- 35917 AppJmol.java
-rw-r--r-- 5529 AppJmolBinding.java
-rw-r--r-- 11875 AppVarna.java
-rw-r--r-- 27176 AppVarnaBinding.java
-rw-r--r-- 3130 AssociatePdbFileWithSeq.java
-rw-r--r-- 22546 BlogReader.java
-rw-r--r-- 16401 Console.java
-rw-r--r-- 5307 CutAndPasteHtmlTransfer.java
-rwxr-xr-x 6085 CutAndPasteTransfer.java
-rwxr-xr-x 22560 DasSourceBrowser.java
-rw-r--r-- 75723 Desktop.java
-rwxr-xr-x 3649 EPSOptions.java
-rw-r--r-- 2496 EditNameDialog.java
-rw-r--r-- 14439 FeatureColourChooser.java
-rwxr-xr-x 40811 FeatureRenderer.java
-rwxr-xr-x 47783 FeatureSettings.java
-rwxr-xr-x 6682 Finder.java
-rwxr-xr-x 6819 FontChooser.java
-rw-r--r-- 1715 IProgressIndicator.java
-rw-r--r-- 1197 IProgressIndicatorHandler.java
-rwxr-xr-x 11064 IdCanvas.java
-rwxr-xr-x 10932 IdPanel.java
-rwxr-xr-x 3289 IdwidthAdjuster.java
-rw-r--r-- 15024 JDatabaseTree.java
-rw-r--r-- 133437 Jalview2XML.java
-rwxr-xr-x 13923 Jalview2XML_V1.java
-rw-r--r-- 1919 JalviewAppender.java
-rw-r--r-- 2971 JalviewChangeSupport.java
-rw-r--r-- 4113 JalviewDialog.java
-rw-r--r-- 5461 JvSwingUtils.java
-rw-r--r-- 2652 OOMWarning.java
-rw-r--r-- 23512 OptsAndParamsPage.java
-rw-r--r-- 1002 OptsParametersContainerI.java
-rwxr-xr-x 10913 OverviewPanel.java
-rwxr-xr-x 17089 PCAPanel.java
-rwxr-xr-x 5968 PaintRefresher.java
-rwxr-xr-x 3938 PairwiseAlignPanel.java
-rw-r--r-- 59646 PopupMenu.java
-rwxr-xr-x 24453 Preferences.java
-rw-r--r-- 6288 PromptUserConfig.java
-rwxr-xr-x 7042 RedundancyPanel.java
-rw-r--r-- 7585 RestInputParamEditDialog.java
-rw-r--r-- 15335 RestServiceEditorPane.java
-rwxr-xr-x 16486 RotatableCanvas.java
-rwxr-xr-x 11911 ScalePanel.java
-rw-r--r-- 18560 ScriptWindow.java
-rwxr-xr-x 22838 SeqCanvas.java
-rw-r--r-- 44452 SeqPanel.java
-rwxr-xr-x 24682 SequenceFetcher.java
-rwxr-xr-x 11573 SequenceRenderer.java
-rwxr-xr-x 8044 SliderPanel.java
-rwxr-xr-x 8993 SplashScreen.java
-rw-r--r-- 5265 TextColourChooser.java
-rwxr-xr-x 22562 TreeCanvas.java
-rwxr-xr-x 21425 TreePanel.java
-rwxr-xr-x 23570 UserDefinedColours.java
-rw-r--r-- 5125 UserQuestionnaireCheck.java
-rw-r--r-- 35009 VamsasApplication.java
-rw-r--r-- 8439 ViewSelectionMenu.java
-rwxr-xr-x 22299 WebserviceInfo.java
-rw-r--r-- 41463 WsJobParameters.java
-rw-r--r-- 9798 WsParamSetManager.java
-rw-r--r-- 16591 WsPreferences.java