source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	284	.cvsignore	blob \| history \| raw
-rw-r--r--	2993	AlignExportSettings.java	blob \| history \| raw
-rw-r--r--	172482	AlignFrame.java	blob \| history \| raw
-rw-r--r--	33278	AlignViewport.java	blob \| history \| raw
-rw-r--r--	48909	AlignmentPanel.java	blob \| history \| raw
-rw-r--r--	18567	AnnotationChooser.java	blob \| history \| raw
-rw-r--r--	13928	AnnotationColourChooser.java	blob \| history \| raw
-rw-r--r--	26137	AnnotationColumnChooser.java	blob \| history \| raw
-rw-r--r--	9345	AnnotationExporter.java	blob \| history \| raw
-rwxr-xr-x	35444	AnnotationLabels.java	blob \| history \| raw
-rwxr-xr-x	28178	AnnotationPanel.java	blob \| history \| raw
-rw-r--r--	10163	AnnotationRowFilter.java	blob \| history \| raw
-rw-r--r--	31979	AppJmol.java	blob \| history \| raw
-rw-r--r--	5031	AppJmolBinding.java	blob \| history \| raw
-rw-r--r--	19366	AppVarna.java	blob \| history \| raw
-rw-r--r--	13967	AppVarnaBinding.java	blob \| history \| raw
-rw-r--r--	2760	AssociatePdbFileWithSeq.java	blob \| history \| raw
-rw-r--r--	23352	BlogReader.java	blob \| history \| raw
-rw-r--r--	33661	ChimeraViewFrame.java	blob \| history \| raw
-rw-r--r--	16952	Console.java	blob \| history \| raw
-rw-r--r--	10575	CrossRefAction.java	blob \| history \| raw
-rw-r--r--	6131	CutAndPasteHtmlTransfer.java	blob \| history \| raw
-rw-r--r--	10662	CutAndPasteTransfer.java	blob \| history \| raw
-rw-r--r--	23249	DasSourceBrowser.java	blob \| history \| raw
-rw-r--r--	92675	Desktop.java	blob \| history \| raw
-rw-r--r--	4210	EPSOptions.java	blob \| history \| raw
-rw-r--r--	2808	EditNameDialog.java	blob \| history \| raw
-rw-r--r--	15501	FeatureColourChooser.java	blob \| history \| raw
-rw-r--r--	13270	FeatureRenderer.java	blob \| history \| raw
-rw-r--r--	51672	FeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	10095	Finder.java	blob \| history \| raw
-rwxr-xr-x	9485	FontChooser.java	blob \| history \| raw
-rw-r--r--	4171	HTMLOptions.java	blob \| history \| raw
-rw-r--r--	2779	Help.java	blob \| history \| raw
-rw-r--r--	1736	IProgressIndicator.java	blob \| history \| raw
-rw-r--r--	1218	IProgressIndicatorHandler.java	blob \| history \| raw
-rwxr-xr-x	11808	IdCanvas.java	blob \| history \| raw
-rwxr-xr-x	13660	IdPanel.java	blob \| history \| raw
-rwxr-xr-x	3954	IdwidthAdjuster.java	blob \| history \| raw
-rw-r--r--	15708	JDatabaseTree.java	blob \| history \| raw
-rw-r--r--	175477	Jalview2XML.java	blob \| history \| raw
-rwxr-xr-x	15314	Jalview2XML_V1.java	blob \| history \| raw
-rw-r--r--	1940	JalviewAppender.java	blob \| history \| raw
-rw-r--r--	2992	JalviewChangeSupport.java	blob \| history \| raw
-rw-r--r--	3508	JalviewChimeraBindingModel.java	blob \| history \| raw
-rw-r--r--	4287	JalviewDialog.java	blob \| history \| raw
-rw-r--r--	8378	JvSwingUtils.java	blob \| history \| raw
-rw-r--r--	2891	MenuChooser.java	blob \| history \| raw
-rw-r--r--	2614	OOMWarning.java	blob \| history \| raw
-rw-r--r--	24405	OptsAndParamsPage.java	blob \| history \| raw
-rw-r--r--	1023	OptsParametersContainerI.java	blob \| history \| raw
-rwxr-xr-x	12292	OverviewPanel.java	blob \| history \| raw
-rw-r--r--	20180	PCAPanel.java	blob \| history \| raw
-rwxr-xr-x	6338	PaintRefresher.java	blob \| history \| raw
-rwxr-xr-x	3988	PairwiseAlignPanel.java	blob \| history \| raw
-rw-r--r--	70423	PopupMenu.java	blob \| history \| raw
-rwxr-xr-x	34270	Preferences.java	blob \| history \| raw
-rw-r--r--	6965	ProgressBar.java	blob \| history \| raw
-rw-r--r--	6319	PromptUserConfig.java	blob \| history \| raw
-rwxr-xr-x	7953	RedundancyPanel.java	blob \| history \| raw
-rw-r--r--	7598	RestInputParamEditDialog.java	blob \| history \| raw
-rw-r--r--	15659	RestServiceEditorPane.java	blob \| history \| raw
-rwxr-xr-x	17216	RotatableCanvas.java	blob \| history \| raw
-rw-r--r--	4165	SVGOptions.java	blob \| history \| raw
-rwxr-xr-x	13990	ScalePanel.java	blob \| history \| raw
-rwxr-xr-x	23420	SeqCanvas.java	blob \| history \| raw
-rw-r--r--	50926	SeqPanel.java	blob \| history \| raw
-rwxr-xr-x	30729	SequenceFetcher.java	blob \| history \| raw
-rwxr-xr-x	14225	SequenceRenderer.java	blob \| history \| raw
-rwxr-xr-x	8446	SliderPanel.java	blob \| history \| raw
-rwxr-xr-x	9308	SplashScreen.java	blob \| history \| raw
-rw-r--r--	22190	SplitFrame.java	blob \| history \| raw
-rw-r--r--	36272	StructureChooser.java	blob \| history \| raw
-rw-r--r--	6243	StructureViewer.java	blob \| history \| raw
-rw-r--r--	13266	StructureViewerBase.java	blob \| history \| raw
-rw-r--r--	6040	TextColourChooser.java	blob \| history \| raw
-rwxr-xr-x	26368	TreeCanvas.java	blob \| history \| raw
-rwxr-xr-x	23603	TreePanel.java	blob \| history \| raw
-rwxr-xr-x	26974	UserDefinedColours.java	blob \| history \| raw
-rw-r--r--	5325	UserQuestionnaireCheck.java	blob \| history \| raw
-rw-r--r--	35373	VamsasApplication.java	blob \| history \| raw
-rw-r--r--	8289	ViewSelectionMenu.java	blob \| history \| raw
-rw-r--r--	22009	WebserviceInfo.java	blob \| history \| raw
-rw-r--r--	43166	WsJobParameters.java	blob \| history \| raw
-rw-r--r--	9969	WsParamSetManager.java	blob \| history \| raw
-rw-r--r--	17571	WsPreferences.java	blob \| history \| raw