source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	284	.cvsignore	blob \| history \| raw
-rw-r--r--	3066	AlignExportSettings.java	blob \| history \| raw
-rw-r--r--	166710	AlignFrame.java	blob \| history \| raw
-rw-r--r--	32585	AlignViewport.java	blob \| history \| raw
-rw-r--r--	50697	AlignmentPanel.java	blob \| history \| raw
-rw-r--r--	18577	AnnotationChooser.java	blob \| history \| raw
-rw-r--r--	13970	AnnotationColourChooser.java	blob \| history \| raw
-rw-r--r--	26137	AnnotationColumnChooser.java	blob \| history \| raw
-rw-r--r--	9361	AnnotationExporter.java	blob \| history \| raw
-rwxr-xr-x	35483	AnnotationLabels.java	blob \| history \| raw
-rwxr-xr-x	28163	AnnotationPanel.java	blob \| history \| raw
-rw-r--r--	10090	AnnotationRowFilter.java	blob \| history \| raw
-rw-r--r--	20880	AppJmol.java	blob \| history \| raw
-rw-r--r--	5225	AppJmolBinding.java	blob \| history \| raw
-rw-r--r--	19366	AppVarna.java	blob \| history \| raw
-rw-r--r--	13969	AppVarnaBinding.java	blob \| history \| raw
-rw-r--r--	2796	AssociatePdbFileWithSeq.java	blob \| history \| raw
-rw-r--r--	23352	BlogReader.java	blob \| history \| raw
-rw-r--r--	20925	ChimeraViewFrame.java	blob \| history \| raw
-rw-r--r--	8495	ColourMenuHelper.java	blob \| history \| raw
-rw-r--r--	16952	Console.java	blob \| history \| raw
-rw-r--r--	10577	CrossRefAction.java	blob \| history \| raw
-rw-r--r--	6131	CutAndPasteHtmlTransfer.java	blob \| history \| raw
-rw-r--r--	10790	CutAndPasteTransfer.java	blob \| history \| raw
-rw-r--r--	23258	DasSourceBrowser.java	blob \| history \| raw
-rw-r--r--	96565	Desktop.java	blob \| history \| raw
-rw-r--r--	4244	EPSOptions.java	blob \| history \| raw
-rw-r--r--	2811	EditNameDialog.java	blob \| history \| raw
-rw-r--r--	15501	FeatureColourChooser.java	blob \| history \| raw
-rw-r--r--	13304	FeatureRenderer.java	blob \| history \| raw
-rw-r--r--	51372	FeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	10202	Finder.java	blob \| history \| raw
-rwxr-xr-x	9487	FontChooser.java	blob \| history \| raw
-rw-r--r--	4205	HTMLOptions.java	blob \| history \| raw
-rw-r--r--	2770	Help.java	blob \| history \| raw
-rw-r--r--	1736	IProgressIndicator.java	blob \| history \| raw
-rw-r--r--	1218	IProgressIndicatorHandler.java	blob \| history \| raw
-rwxr-xr-x	11808	IdCanvas.java	blob \| history \| raw
-rwxr-xr-x	12566	IdPanel.java	blob \| history \| raw
-rwxr-xr-x	3954	IdwidthAdjuster.java	blob \| history \| raw
-rw-r--r--	15708	JDatabaseTree.java	blob \| history \| raw
-rw-r--r--	176285	Jalview2XML.java	blob \| history \| raw
-rwxr-xr-x	15549	Jalview2XML_V1.java	blob \| history \| raw
-rw-r--r--	1940	JalviewAppender.java	blob \| history \| raw
-rw-r--r--	2992	JalviewChangeSupport.java	blob \| history \| raw
-rw-r--r--	3671	JalviewChimeraBindingModel.java	blob \| history \| raw
-rw-r--r--	4287	JalviewDialog.java	blob \| history \| raw
-rw-r--r--	9658	JvOptionPane.java	blob \| history \| raw
-rw-r--r--	8378	JvSwingUtils.java	blob \| history \| raw
-rw-r--r--	2891	MenuChooser.java	blob \| history \| raw
-rw-r--r--	2625	OOMWarning.java	blob \| history \| raw
-rw-r--r--	24406	OptsAndParamsPage.java	blob \| history \| raw
-rw-r--r--	1023	OptsParametersContainerI.java	blob \| history \| raw
-rwxr-xr-x	12293	OverviewPanel.java	blob \| history \| raw
-rw-r--r--	20612	PCAPanel.java	blob \| history \| raw
-rwxr-xr-x	6338	PaintRefresher.java	blob \| history \| raw
-rwxr-xr-x	3988	PairwiseAlignPanel.java	blob \| history \| raw
-rw-r--r--	58977	PopupMenu.java	blob \| history \| raw
-rwxr-xr-x	39693	Preferences.java	blob \| history \| raw
-rw-r--r--	6965	ProgressBar.java	blob \| history \| raw
-rw-r--r--	6325	PromptUserConfig.java	blob \| history \| raw
-rwxr-xr-x	7696	RedundancyPanel.java	blob \| history \| raw
-rw-r--r--	7602	RestInputParamEditDialog.java	blob \| history \| raw
-rw-r--r--	15659	RestServiceEditorPane.java	blob \| history \| raw
-rwxr-xr-x	17216	RotatableCanvas.java	blob \| history \| raw
-rw-r--r--	4199	SVGOptions.java	blob \| history \| raw
-rwxr-xr-x	13472	ScalePanel.java	blob \| history \| raw
-rwxr-xr-x	23396	SeqCanvas.java	blob \| history \| raw
-rw-r--r--	50928	SeqPanel.java	blob \| history \| raw
-rwxr-xr-x	30779	SequenceFetcher.java	blob \| history \| raw
-rwxr-xr-x	14348	SequenceRenderer.java	blob \| history \| raw
-rwxr-xr-x	11308	SliderPanel.java	blob \| history \| raw
-rwxr-xr-x	9308	SplashScreen.java	blob \| history \| raw
-rw-r--r--	22193	SplitFrame.java	blob \| history \| raw
-rw-r--r--	36589	StructureChooser.java	blob \| history \| raw
-rw-r--r--	7011	StructureViewer.java	blob \| history \| raw
-rw-r--r--	26288	StructureViewerBase.java	blob \| history \| raw
-rw-r--r--	6044	TextColourChooser.java	blob \| history \| raw
-rwxr-xr-x	26543	TreeCanvas.java	blob \| history \| raw
-rw-r--r--	4646	TreeChooser.java	blob \| history \| raw
-rwxr-xr-x	23282	TreePanel.java	blob \| history \| raw
-rwxr-xr-x	22991	UserDefinedColours.java	blob \| history \| raw
-rw-r--r--	5329	UserQuestionnaireCheck.java	blob \| history \| raw
-rw-r--r--	35379	VamsasApplication.java	blob \| history \| raw
-rw-r--r--	8289	ViewSelectionMenu.java	blob \| history \| raw
-rw-r--r--	22011	WebserviceInfo.java	blob \| history \| raw
-rw-r--r--	43567	WsJobParameters.java	blob \| history \| raw
-rw-r--r--	9807	WsParamSetManager.java	blob \| history \| raw
-rw-r--r--	17654	WsPreferences.java	blob \| history \| raw