Merge branch 'bug/JAL-2421overviewboxflicker' into develop
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 42 .cvsignore
-rw-r--r-- 2972 AMSAFile.java
-rwxr-xr-x 9850 AlignFile.java
-rw-r--r-- 586 AlignmentFileReaderI.java
-rw-r--r-- 536 AlignmentFileWriterI.java
-rw-r--r-- 4133 AlignmentProperties.java
-rwxr-xr-x 51708 AnnotationFile.java
-rwxr-xr-x 18130 AppletFormatAdapter.java
-rwxr-xr-x 6272 BLCFile.java
-rw-r--r-- 8719 BioJsHTMLOutput.java
-rw-r--r-- 991 ClansFile.java
-rwxr-xr-x 6601 ClustalFile.java
-rw-r--r-- 1463 DBRefFile.java
-rw-r--r-- 85 DataSourceType.java
-rwxr-xr-x 5072 FastaFile.java
-rwxr-xr-x 34335 FeaturesFile.java
-rw-r--r-- 8554 FileFormat.java
-rw-r--r-- 174 FileFormatException.java
-rw-r--r-- 1578 FileFormatI.java
-rw-r--r-- 4070 FileFormats.java
-rwxr-xr-x 16781 FileLoader.java
-rwxr-xr-x 15572 FileParse.java
-rwxr-xr-x 8158 FormatAdapter.java
-rwxr-xr-x 10840 HTMLOutput.java
-rw-r--r-- 5071 HtmlFile.java
-rw-r--r-- 12050 HtmlSvgOutput.java
-rwxr-xr-x 11920 IdentifyFile.java
-rw-r--r-- 1610 InputStreamParser.java
-rwxr-xr-x 11815 JPredFile.java
-rw-r--r-- 29597 JSONFile.java
-rwxr-xr-x 10864 JalviewFileChooser.java
-rwxr-xr-x 4046 JalviewFileFilter.java
-rwxr-xr-x 3802 JalviewFileView.java
-rwxr-xr-x 8677 JnetAnnotationMaker.java
-rwxr-xr-x 9543 MSFfile.java
-rw-r--r-- 1329 MatrixFile.java
-rwxr-xr-x 10349 ModellerDescription.java
-rwxr-xr-x 27442 NewickFile.java
-rw-r--r-- 2272 PDBFeatureSettings.java
-rwxr-xr-x 5064 PIRFile.java
-rwxr-xr-x 4415 PfamFile.java
-rw-r--r-- 9375 PhylipFile.java
-rwxr-xr-x 4449 PileUpfile.java
-rw-r--r-- 6752 RnamlFile.java
-rw-r--r-- 13177 SequenceAnnotationReport.java
-rw-r--r-- 8775 SimpleBlastFile.java
-rw-r--r-- 37379 StockholmFile.java
-rw-r--r-- 12821 StructureFile.java
-rw-r--r-- 17411 TCoffeeScoreFile.java
-rw-r--r-- 93354 VamsasAppDatastore.java
-rwxr-xr-x 8218 WSWUBlastClient.java
drwxr-xr-x - gff
drwxr-xr-x - packed
drwxr-xr-x - vamsas