format adapter should return AlignmentI
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 42 .cvsignore
-rw-r--r-- 2577 AMSAFile.java
-rwxr-xr-x 8833 AlignFile.java
-rw-r--r-- 4088 AlignmentProperties.java
-rwxr-xr-x 41749 AnnotationFile.java
-rwxr-xr-x 19684 AppletFormatAdapter.java
-rwxr-xr-x 7184 BLCFile.java
-rw-r--r-- 970 ClansFile.java
-rwxr-xr-x 7099 ClustalFile.java
-rw-r--r-- 1348 DBRefFile.java
-rwxr-xr-x 6364 FastaFile.java
-rwxr-xr-x 32969 FeaturesFile.java
-rwxr-xr-x 12658 FileLoader.java
-rwxr-xr-x 10367 FileParse.java
-rwxr-xr-x 7936 FormatAdapter.java
-rwxr-xr-x 12088 HTMLOutput.java
-rwxr-xr-x 8864 IdentifyFile.java
-rwxr-xr-x 12667 JPredFile.java
-rwxr-xr-x 7116 JalviewFileChooser.java
-rwxr-xr-x 3950 JalviewFileFilter.java
-rwxr-xr-x 2760 JalviewFileView.java
-rwxr-xr-x 6484 JnetAnnotationMaker.java
-rwxr-xr-x 10282 MSFfile.java
-rw-r--r-- 1308 MatrixFile.java
-rwxr-xr-x 10320 ModellerDescription.java
-rwxr-xr-x 26590 NewickFile.java
-rwxr-xr-x 5633 PIRFile.java
-rwxr-xr-x 4788 PfamFile.java
-rwxr-xr-x 5457 PileUpfile.java
-rw-r--r-- 11838 RnamlFile.java
-rw-r--r-- 11989 SequenceAnnotationReport.java
-rw-r--r-- 9356 SimpleBlastFile.java
-rw-r--r-- 27910 StockholmFile.java
-rw-r--r-- 17444 TCoffeeScoreFile.java
-rw-r--r-- 92125 VamsasAppDatastore.java
-rwxr-xr-x 8036 WSWUBlastClient.java
drwxr-xr-x - packed
drwxr-xr-x - vamsas