git://source.jalview.org
/
jalview.git
/ tree
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
| tree
history
|
HEAD
|
snapshot
JAL-4059 Converting Pattern/Matcher methods that are possibly incompatible with JS...
[jalview.git]
/
src
/
jalview
/
io
/
drwxr-xr-x
..
-rw-r--r--
2972
AMSAFile.java
blob
|
history
|
raw
-rwxr-xr-x
11424
AlignFile.java
blob
|
history
|
raw
-rw-r--r--
1452
AlignmentFileReaderI.java
blob
|
history
|
raw
-rw-r--r--
1403
AlignmentFileWriterI.java
blob
|
history
|
raw
-rw-r--r--
4133
AlignmentProperties.java
blob
|
history
|
raw
-rwxr-xr-x
51472
AnnotationFile.java
blob
|
history
|
raw
-rwxr-xr-x
20088
AppletFormatAdapter.java
blob
|
history
|
raw
-rwxr-xr-x
6217
BLCFile.java
blob
|
history
|
raw
-rw-r--r--
1849
BackupFilenameFilter.java
blob
|
history
|
raw
-rw-r--r--
5228
BackupFilenameParts.java
blob
|
history
|
raw
-rw-r--r--
34432
BackupFiles.java
blob
|
history
|
raw
-rw-r--r--
6281
BackupFilesPresetEntry.java
blob
|
history
|
raw
-rw-r--r--
8058
BioJsHTMLOutput.java
blob
|
history
|
raw
-rwxr-xr-x
6685
ClustalFile.java
blob
|
history
|
raw
-rw-r--r--
1463
DBRefFile.java
blob
|
history
|
raw
-rw-r--r--
1109
DataSourceType.java
blob
|
history
|
raw
-rw-r--r--
24769
EMBLLikeFlatFile.java
blob
|
history
|
raw
-rw-r--r--
5859
EmblFlatFile.java
blob
|
history
|
raw
-rwxr-xr-x
5197
FastaFile.java
blob
|
history
|
raw
-rwxr-xr-x
44187
FeaturesFile.java
blob
|
history
|
raw
-rw-r--r--
10647
FileFormat.java
blob
|
history
|
raw
-rw-r--r--
1039
FileFormatException.java
blob
|
history
|
raw
-rw-r--r--
2443
FileFormatI.java
blob
|
history
|
raw
-rw-r--r--
5018
FileFormats.java
blob
|
history
|
raw
-rwxr-xr-x
21524
FileLoader.java
blob
|
history
|
raw
-rwxr-xr-x
21358
FileParse.java
blob
|
history
|
raw
-rwxr-xr-x
8804
FormatAdapter.java
blob
|
history
|
raw
-rw-r--r--
5088
GenBankFile.java
blob
|
history
|
raw
-rw-r--r--
11334
HTMLOutput.java
blob
|
history
|
raw
-rw-r--r--
5031
HtmlFile.java
blob
|
history
|
raw
-rw-r--r--
12793
HtmlSvgOutput.java
blob
|
history
|
raw
-rwxr-xr-x
13633
IdentifyFile.java
blob
|
history
|
raw
-rw-r--r--
1503
InputStreamParser.java
blob
|
history
|
raw
-rw-r--r--
1127
IntKeyStringValueEntry.java
blob
|
history
|
raw
-rwxr-xr-x
11826
JPredFile.java
blob
|
history
|
raw
-rw-r--r--
28941
JSONFile.java
blob
|
history
|
raw
-rwxr-xr-x
21301
JalviewFileChooser.java
blob
|
history
|
raw
-rwxr-xr-x
4846
JalviewFileFilter.java
blob
|
history
|
raw
-rwxr-xr-x
4564
JalviewFileView.java
blob
|
history
|
raw
-rwxr-xr-x
8514
JnetAnnotationMaker.java
blob
|
history
|
raw
-rwxr-xr-x
9566
MSFfile.java
blob
|
history
|
raw
-rwxr-xr-x
10368
ModellerDescription.java
blob
|
history
|
raw
-rwxr-xr-x
27331
NewickFile.java
blob
|
history
|
raw
-rw-r--r--
4070
PContactPredictionFile.java
blob
|
history
|
raw
-rw-r--r--
2214
PDBFeatureSettings.java
blob
|
history
|
raw
-rwxr-xr-x
5076
PIRFile.java
blob
|
history
|
raw
-rwxr-xr-x
4372
PfamFile.java
blob
|
history
|
raw
-rw-r--r--
9320
PhylipFile.java
blob
|
history
|
raw
-rwxr-xr-x
4406
PileUpfile.java
blob
|
history
|
raw
-rw-r--r--
6845
RnamlFile.java
blob
|
history
|
raw
-rw-r--r--
12501
ScoreMatrixFile.java
blob
|
history
|
raw
-rw-r--r--
17493
SequenceAnnotationReport.java
blob
|
history
|
raw
-rw-r--r--
8827
SimpleBlastFile.java
blob
|
history
|
raw
-rw-r--r--
41082
StockholmFile.java
blob
|
history
|
raw
-rw-r--r--
14190
StructureFile.java
blob
|
history
|
raw
-rw-r--r--
17464
TCoffeeScoreFile.java
blob
|
history
|
raw
-rw-r--r--
93582
VamsasAppDatastore.java
blob
|
history
|
raw
-rwxr-xr-x
8384
WSWUBlastClient.java
blob
|
history
|
raw
drwxr-xr-x
-
cache
tree
|
history
drwxr-xr-x
-
exceptions
tree
|
history
drwxr-xr-x
-
gff
tree
|
history
drwxr-xr-x
-
packed
tree
|
history
drwxr-xr-x
-
vamsas
tree
|
history
drwxr-xr-x
-
vcf
tree
|
history