Merge branch 'bug/JAL-1923_290b2_group_annots' into develop
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 42 .cvsignore
-rw-r--r-- 2653 AMSAFile.java
-rwxr-xr-x 9192 AlignFile.java
-rw-r--r-- 4133 AlignmentProperties.java
-rwxr-xr-x 51764 AnnotationFile.java
-rwxr-xr-x 24568 AppletFormatAdapter.java
-rwxr-xr-x 6303 BLCFile.java
-rw-r--r-- 10939 BioJsHTMLOutput.java
-rw-r--r-- 991 ClansFile.java
-rwxr-xr-x 6566 ClustalFile.java
-rw-r--r-- 1369 DBRefFile.java
-rwxr-xr-x 5285 FastaFile.java
-rwxr-xr-x 47377 FeaturesFile.java
-rwxr-xr-x 16360 FileLoader.java
-rwxr-xr-x 14383 FileParse.java
-rwxr-xr-x 11114 FormatAdapter.java
-rw-r--r-- 4077 Gff3File.java
-rwxr-xr-x 12439 HTMLOutput.java
-rw-r--r-- 4493 HtmlFile.java
-rw-r--r-- 32038 HtmlSvgOutput.java
-rwxr-xr-x 10183 IdentifyFile.java
-rw-r--r-- 1610 InputStreamParser.java
-rwxr-xr-x 11731 JPredFile.java
-rw-r--r-- 28801 JSONFile.java
-rwxr-xr-x 8392 JalviewFileChooser.java
-rwxr-xr-x 4046 JalviewFileFilter.java
-rwxr-xr-x 3268 JalviewFileView.java
-rwxr-xr-x 8675 JnetAnnotationMaker.java
-rwxr-xr-x 9389 MSFfile.java
-rw-r--r-- 1329 MatrixFile.java
-rwxr-xr-x 10347 ModellerDescription.java
-rwxr-xr-x 27386 NewickFile.java
-rwxr-xr-x 4987 PIRFile.java
-rwxr-xr-x 4288 PfamFile.java
-rw-r--r-- 9438 PhylipFile.java
-rwxr-xr-x 4515 PileUpfile.java
-rw-r--r-- 6856 RnamlFile.java
-rw-r--r-- 11884 SequenceAnnotationReport.java
-rw-r--r-- 8758 SimpleBlastFile.java
-rw-r--r-- 37337 StockholmFile.java
-rw-r--r-- 17215 TCoffeeScoreFile.java
-rw-r--r-- 93374 VamsasAppDatastore.java
-rwxr-xr-x 8185 WSWUBlastClient.java
drwxr-xr-x - packed
drwxr-xr-x - vamsas