refactored to propery separate addToDocument,addFromDocument, updateToDocument, updat...
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 37 .cvsignore
-rw-r--r-- 2417 AMSAFile.java
-rwxr-xr-x 6132 AlignFile.java
-rwxr-xr-x 29803 AnnotationFile.java
-rwxr-xr-x 13996 AppletFormatAdapter.java
-rwxr-xr-x 6242 BLCFile.java
-rw-r--r-- 1027 ClansFile.java
-rwxr-xr-x 5001 ClustalFile.java
-rw-r--r-- 1413 DBRefFile.java
-rwxr-xr-x 5446 FastaFile.java
-rwxr-xr-x 17959 FeaturesFile.java
-rwxr-xr-x 12577 FileLoader.java
-rwxr-xr-x 9404 FileParse.java
-rwxr-xr-x 7551 FormatAdapter.java
-rwxr-xr-x 12127 HTMLOutput.java
-rwxr-xr-x 7160 IdentifyFile.java
-rwxr-xr-x 11285 JPredFile.java
-rwxr-xr-x 7184 JalviewFileChooser.java
-rwxr-xr-x 3979 JalviewFileFilter.java
-rwxr-xr-x 2789 JalviewFileView.java
-rwxr-xr-x 6578 JnetAnnotationMaker.java
-rwxr-xr-x 9143 MSFfile.java
-rw-r--r-- 1401 MatrixFile.java
-rwxr-xr-x 9752 ModellerDescription.java
-rwxr-xr-x 26828 NewickFile.java
-rwxr-xr-x 4744 PIRFile.java
-rwxr-xr-x 3848 PfamFile.java
-rwxr-xr-x 4286 PileUpfile.java
-rw-r--r-- 21065 StockholmFile.java
-rw-r--r-- 90418 VamsasAppDatastore.java
-rwxr-xr-x 8143 WSWUBlastClient.java
drwxr-xr-x - vamsas