main method for running from command line and better binary file/archive detection
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 37 .cvsignore
-rw-r--r-- 2511 AMSAFile.java
-rwxr-xr-x 5719 AlignFile.java
-rwxr-xr-x 24232 AnnotationFile.java
-rwxr-xr-x 6349 AppletFormatAdapter.java
-rwxr-xr-x 5918 BLCFile.java
-rwxr-xr-x 5083 ClustalFile.java
-rw-r--r-- 11060 DBRefFetcher.java
-rwxr-xr-x 18066 DasSequenceFeatureFetcher.java
-rwxr-xr-x 5822 EBIFetchClient.java
-rwxr-xr-x 5530 FastaFile.java
-rwxr-xr-x 15422 FeaturesFile.java
-rwxr-xr-x 6547 FileLoader.java
-rwxr-xr-x 6359 FileParse.java
-rwxr-xr-x 3602 FormatAdapter.java
-rwxr-xr-x 11666 HTMLOutput.java
-rwxr-xr-x 6377 IdentifyFile.java
-rwxr-xr-x 9394 JPredFile.java
-rwxr-xr-x 7206 JalviewFileChooser.java
-rwxr-xr-x 4195 JalviewFileFilter.java
-rwxr-xr-x 2862 JalviewFileView.java
-rwxr-xr-x 6565 JnetAnnotationMaker.java
-rwxr-xr-x 9395 MSFfile.java
-rwxr-xr-x 10001 ModellerDescription.java
-rwxr-xr-x 21366 NewickFile.java
-rwxr-xr-x 4860 PIRFile.java
-rwxr-xr-x 3973 PfamFile.java
-rwxr-xr-x 4333 PileUpfile.java
-rw-r--r-- 19626 StockholmFile.java
-rwxr-xr-x 68022 VamsasDatastore.java
-rwxr-xr-x 8497 WSWUBlastClient.java