Merge branch 'documentation/JAL-2325_release2101' into releases/Release_2_10_Branch
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 42 .cvsignore
-rw-r--r-- 2653 AMSAFile.java
-rwxr-xr-x 9610 AlignFile.java
-rw-r--r-- 4133 AlignmentProperties.java
-rwxr-xr-x 51731 AnnotationFile.java
-rwxr-xr-x 26638 AppletFormatAdapter.java
-rwxr-xr-x 6303 BLCFile.java
-rw-r--r-- 8719 BioJsHTMLOutput.java
-rw-r--r-- 991 ClansFile.java
-rwxr-xr-x 6624 ClustalFile.java
-rw-r--r-- 1369 DBRefFile.java
-rwxr-xr-x 5321 FastaFile.java
-rwxr-xr-x 34131 FeaturesFile.java
-rwxr-xr-x 17026 FileLoader.java
-rwxr-xr-x 15404 FileParse.java
-rwxr-xr-x 10740 FormatAdapter.java
-rwxr-xr-x 11835 HTMLOutput.java
-rw-r--r-- 5008 HtmlFile.java
-rw-r--r-- 12349 HtmlSvgOutput.java
-rwxr-xr-x 10995 IdentifyFile.java
-rw-r--r-- 1610 InputStreamParser.java
-rwxr-xr-x 11731 JPredFile.java
-rw-r--r-- 29429 JSONFile.java
-rwxr-xr-x 8392 JalviewFileChooser.java
-rwxr-xr-x 4046 JalviewFileFilter.java
-rwxr-xr-x 3268 JalviewFileView.java
-rwxr-xr-x 8677 JnetAnnotationMaker.java
-rwxr-xr-x 9628 MSFfile.java
-rw-r--r-- 1329 MatrixFile.java
-rwxr-xr-x 10349 ModellerDescription.java
-rwxr-xr-x 27386 NewickFile.java
-rw-r--r-- 2232 PDBFeatureSettings.java
-rwxr-xr-x 5056 PIRFile.java
-rwxr-xr-x 4401 PfamFile.java
-rw-r--r-- 9438 PhylipFile.java
-rwxr-xr-x 4504 PileUpfile.java
-rw-r--r-- 6835 RnamlFile.java
-rw-r--r-- 13177 SequenceAnnotationReport.java
-rw-r--r-- 8758 SimpleBlastFile.java
-rw-r--r-- 37151 StockholmFile.java
-rw-r--r-- 13156 StructureFile.java
-rw-r--r-- 17215 TCoffeeScoreFile.java
-rw-r--r-- 93354 VamsasAppDatastore.java
-rwxr-xr-x 8186 WSWUBlastClient.java
drwxr-xr-x - gff
drwxr-xr-x - packed
drwxr-xr-x - vamsas