pir format ambiguity and todo regarding 'format override' parameter
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 37 .cvsignore
-rw-r--r-- 2431 AMSAFile.java
-rwxr-xr-x 6146 AlignFile.java
-rwxr-xr-x 30167 AnnotationFile.java
-rwxr-xr-x 14010 AppletFormatAdapter.java
-rwxr-xr-x 6256 BLCFile.java
-rw-r--r-- 1041 ClansFile.java
-rwxr-xr-x 5015 ClustalFile.java
-rw-r--r-- 1427 DBRefFile.java
-rwxr-xr-x 5460 FastaFile.java
-rwxr-xr-x 26555 FeaturesFile.java
-rwxr-xr-x 12591 FileLoader.java
-rwxr-xr-x 9418 FileParse.java
-rwxr-xr-x 7565 FormatAdapter.java
-rwxr-xr-x 12141 HTMLOutput.java
-rwxr-xr-x 7683 IdentifyFile.java
-rwxr-xr-x 11299 JPredFile.java
-rwxr-xr-x 7198 JalviewFileChooser.java
-rwxr-xr-x 3993 JalviewFileFilter.java
-rwxr-xr-x 2803 JalviewFileView.java
-rwxr-xr-x 6592 JnetAnnotationMaker.java
-rwxr-xr-x 9157 MSFfile.java
-rw-r--r-- 1415 MatrixFile.java
-rwxr-xr-x 9766 ModellerDescription.java
-rwxr-xr-x 26842 NewickFile.java
-rwxr-xr-x 4758 PIRFile.java
-rwxr-xr-x 3862 PfamFile.java
-rwxr-xr-x 4300 PileUpfile.java
-rw-r--r-- 21079 StockholmFile.java
-rw-r--r-- 91719 VamsasAppDatastore.java
-rwxr-xr-x 8157 WSWUBlastClient.java
drwxr-xr-x - vamsas