source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	10672	AlignFile.java	blob \| history \| raw
-rw-r--r--	1372	AlignmentFileReaderI.java	blob \| history \| raw
-rw-r--r--	1324	AlignmentFileWriterI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	51364	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	19327	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6217	BLCFile.java	blob \| history \| raw
-rw-r--r--	7021	BSMLFile.java	blob \| history \| raw
-rw-r--r--	1837	BackupFilenameFilter.java	blob \| history \| raw
-rw-r--r--	5228	BackupFilenameParts.java	blob \| history \| raw
-rw-r--r--	31149	BackupFiles.java	blob \| history \| raw
-rw-r--r--	6281	BackupFilesPresetEntry.java	blob \| history \| raw
-rw-r--r--	7941	BioJsHTMLOutput.java	blob \| history \| raw
-rwxr-xr-x	6661	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1727	CountReader.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	964	DataSourceType.java	blob \| history \| raw
-rw-r--r--	24769	EMBLLikeFlatFile.java	blob \| history \| raw
-rw-r--r--	5859	EmblFlatFile.java	blob \| history \| raw
-rwxr-xr-x	5197	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	44080	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	11262	FileFormat.java	blob \| history \| raw
-rw-r--r--	1039	FileFormatException.java	blob \| history \| raw
-rw-r--r--	2443	FileFormatI.java	blob \| history \| raw
-rw-r--r--	5152	FileFormats.java	blob \| history \| raw
-rwxr-xr-x	21634	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	21334	FileParse.java	blob \| history \| raw
-rwxr-xr-x	8362	FormatAdapter.java	blob \| history \| raw
-rw-r--r--	5088	GenBankFile.java	blob \| history \| raw
-rw-r--r--	17787	HMMFile.java	blob \| history \| raw
-rw-r--r--	10866	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5031	HtmlFile.java	blob \| history \| raw
-rw-r--r--	12730	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	13981	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1503	InputStreamParser.java	blob \| history \| raw
-rw-r--r--	1127	IntKeyStringValueEntry.java	blob \| history \| raw
-rwxr-xr-x	11754	JPredFile.java	blob \| history \| raw
-rw-r--r--	28929	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	17361	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4846	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	4552	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8514	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9530	MSFfile.java	blob \| history \| raw
-rwxr-xr-x	10681	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	29187	NewickFile.java	blob \| history \| raw
-rw-r--r--	2214	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5064	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4360	PfamFile.java	blob \| history \| raw
-rw-r--r--	9308	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4406	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6803	RnamlFile.java	blob \| history \| raw
-rw-r--r--	12501	ScoreMatrixFile.java	blob \| history \| raw
-rw-r--r--	18549	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8803	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	43003	StockholmFile.java	blob \| history \| raw
-rw-r--r--	13265	StructureFile.java	blob \| history \| raw
-rw-r--r--	17452	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93745	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8345	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	cache	tree \| history
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history
drwxr-xr-x	-	vcf	tree \| history