Merge branch 'develop' into Release_2_8_2_Branch
[jalview.git] / src / jalview / io /
drwxr-xr-x   ..
-rw-r--r-- 42 .cvsignore
-rw-r--r-- 2584 AMSAFile.java
-rwxr-xr-x 7148 AlignFile.java
-rw-r--r-- 4095 AlignmentProperties.java
-rwxr-xr-x 45845 AnnotationFile.java
-rwxr-xr-x 19868 AppletFormatAdapter.java
-rwxr-xr-x 6205 BLCFile.java
-rw-r--r-- 977 ClansFile.java
-rwxr-xr-x 6381 ClustalFile.java
-rw-r--r-- 1355 DBRefFile.java
-rwxr-xr-x 5103 FastaFile.java
-rwxr-xr-x 31887 FeaturesFile.java
-rwxr-xr-x 13119 FileLoader.java
-rwxr-xr-x 11664 FileParse.java
-rwxr-xr-x 8063 FormatAdapter.java
-rwxr-xr-x 12164 HTMLOutput.java
-rwxr-xr-x 8999 IdentifyFile.java
-rw-r--r-- 1585 InputStreamParser.java
-rwxr-xr-x 11238 JPredFile.java
-rwxr-xr-x 7249 JalviewFileChooser.java
-rwxr-xr-x 3957 JalviewFileFilter.java
-rwxr-xr-x 2767 JalviewFileView.java
-rwxr-xr-x 6491 JnetAnnotationMaker.java
-rwxr-xr-x 9303 MSFfile.java
-rw-r--r-- 1315 MatrixFile.java
-rwxr-xr-x 10327 ModellerDescription.java
-rwxr-xr-x 26999 NewickFile.java
-rwxr-xr-x 4915 PIRFile.java
-rwxr-xr-x 4071 PfamFile.java
-rwxr-xr-x 4479 PileUpfile.java
-rw-r--r-- 6164 RnamlFile.java
-rw-r--r-- 11996 SequenceAnnotationReport.java
-rw-r--r-- 8638 SimpleBlastFile.java
-rw-r--r-- 37057 StockholmFile.java
-rw-r--r-- 17152 TCoffeeScoreFile.java
-rw-r--r-- 92132 VamsasAppDatastore.java
-rwxr-xr-x 7580 WSWUBlastClient.java
drwxr-xr-x - packed
drwxr-xr-x - vamsas