0a895decfd65ab9d91cfca1dcc02ec2dfcf98bf5
-rw-r--r-- 9761 AlignCalcManager.java
-rw-r--r-- 3479 AlignCalcWorker.java
-rw-r--r-- 4634 AlignmentAnnotationFactory.java
-rw-r--r-- 1272 AnnotationProviderI.java
-rw-r--r-- 4021 AnnotationWorker.java
-rw-r--r-- 6864 ColumnCounterWorker.java
-rw-r--r-- 3380 ComplementConsensusThread.java
-rw-r--r-- 5802 ConsensusThread.java
-rw-r--r-- 3948 ConservationThread.java
-rw-r--r-- 2550 FeatureCounterI.java
-rw-r--r-- 4638 StrucConsensusThread.java