2bcd579206a53a99805015f054b69ea9c1e8036b
-rw-r--r-- 111 .cvsignore
-rwxr-xr-x 13725 Alignment.java
-rwxr-xr-x 8147 AlignmentAnnotation.java
-rwxr-xr-x 5548 AlignmentI.java
-rwxr-xr-x 7408 AlignmentOrder.java
-rw-r--r-- 15065 AlignmentView.java
-rwxr-xr-x 2211 Annotation.java
-rwxr-xr-x 5458 BinaryNode.java
-rwxr-xr-x 3359 BinarySequence.java
-rw-r--r-- 7083 CigarArray.java
-rw-r--r-- 20381 CigarBase.java
-rw-r--r-- 1651 CigarCigar.java
-rw-r--r-- 1325 CigarSimple.java
-rw-r--r-- 20701 ColumnSelection.java
-rwxr-xr-x 1349 DBRefEntry.java
-rwxr-xr-x 1350 DBRefSource.java
-rwxr-xr-x 1311 GraphLine.java
-rwxr-xr-x 6479 HiddenSequences.java
-rwxr-xr-x 1592 PDBEntry.java
-rwxr-xr-x 1471 Provenance.java
-rwxr-xr-x 1372 ProvenanceEntry.java
-rwxr-xr-x 3687 SearchResults.java
-rw-r--r-- 20138 SeqCigar.java
-rwxr-xr-x 14812 Sequence.java
-rwxr-xr-x 6286 SequenceFeature.java
-rwxr-xr-x 11990 SequenceGroup.java
-rwxr-xr-x 5187 SequenceI.java
-rwxr-xr-x 3535 SequenceNode.java
-rwxr-xr-x 1287 SequencePoint.java
-rwxr-xr-x 1980 UniprotEntry.java
-rwxr-xr-x 1126 UniprotFile.java
-rwxr-xr-x 1177 UniprotProteinName.java
-rwxr-xr-x 1362 UniprotSequence.java