605317739d2ba90b13f7e72ac4d18795c6667fd9
-rw-r--r-- 111 .cvsignore
-rw-r--r-- 8585 AlignedCodonFrame.java
-rwxr-xr-x 25208 Alignment.java
-rwxr-xr-x 19630 AlignmentAnnotation.java
-rwxr-xr-x 10564 AlignmentI.java
-rwxr-xr-x 7567 AlignmentOrder.java
-rw-r--r-- 15936 AlignmentView.java
-rwxr-xr-x 3087 Annotation.java
-rwxr-xr-x 5394 BinaryNode.java
-rwxr-xr-x 3399 BinarySequence.java
-rw-r--r-- 7252 CigarArray.java
-rw-r--r-- 19816 CigarBase.java
-rw-r--r-- 1793 CigarCigar.java
-rw-r--r-- 1470 CigarSimple.java
-rw-r--r-- 26244 ColumnSelection.java
-rwxr-xr-x 4425 DBRefEntry.java
-rwxr-xr-x 3399 DBRefSource.java
-rw-r--r-- 1655 FeatureProperties.java
-rwxr-xr-x 1508 GraphLine.java
-rwxr-xr-x 6335 HiddenSequences.java
-rw-r--r-- 10524 Mapping.java
-rw-r--r-- 1020 NodeTransformI.java
-rwxr-xr-x 2547 PDBEntry.java
-rwxr-xr-x 1443 Provenance.java
-rwxr-xr-x 1353 ProvenanceEntry.java
-rwxr-xr-x 4647 SearchResults.java
-rw-r--r-- 21302 SeqCigar.java
-rwxr-xr-x 25555 Sequence.java
-rwxr-xr-x 5936 SequenceFeature.java
-rwxr-xr-x 24228 SequenceGroup.java
-rwxr-xr-x 8206 SequenceI.java
-rwxr-xr-x 4155 SequenceNode.java
-rwxr-xr-x 1499 SequencePoint.java
-rwxr-xr-x 1923 UniprotEntry.java
-rwxr-xr-x 1121 UniprotFile.java
-rwxr-xr-x 1208 UniprotProteinName.java
-rwxr-xr-x 1347 UniprotSequence.java
drwxr-xr-x - xdb